Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013457_P001 | Maize | cytosol | 10.96 | 80.0 |
| KXG20767 | Sorghum | nucleus | 46.23 | 65.53 |
| GSMUA_Achr7P04500_001 | Banana | cytosol | 53.42 | 63.16 |
| TraesCS7A01G479900.1 | Wheat | cytosol | 52.74 | 63.11 |
| Os02t0821800-02 | Rice | nucleus | 52.74 | 62.86 |
| HORVU5Hr1G060300.1 | Barley | cytosol, golgi, mitochondrion, nucleus | 8.56 | 62.5 |
| TraesCS6A01G400300.1 | Wheat | nucleus | 45.55 | 60.73 |
| CDY27819 | Canola | cytosol | 41.78 | 60.7 |
| AT5G52470.1 | Thale cress | nucleus | 63.01 | 59.74 |
| TraesCS7D01G467000.1 | Wheat | nucleus | 58.9 | 59.52 |
| AT4G25630.1 | Thale cress | nucleus, plastid | 65.07 | 59.38 |
| TraesCS7B01G382200.1 | Wheat | nucleus | 57.53 | 58.54 |
| Zm00001d051631_P001 | Maize | cytosol | 22.6 | 58.41 |
| KRH63857 | Soybean | nucleus | 60.96 | 58.17 |
| Bra022595.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 57.88 | 58.08 |
| Solyc03g025270.2.1 | Tomato | nucleus | 62.33 | 57.96 |
| CDY27064 | Canola | cytosol | 57.53 | 57.73 |
| KRH54109 | Soybean | endoplasmic reticulum | 60.27 | 57.7 |
| PGSC0003DMT400010997 | Potato | cytosol | 29.45 | 57.33 |
| Zm00001d014473_P001 | Maize | cytosol | 21.92 | 57.14 |
| EES06036 | Sorghum | nucleus | 59.93 | 57.0 |
| Os05t0176000-01 | Rice | nucleus | 60.27 | 56.96 |
| KRG97622 | Soybean | nucleus | 60.96 | 56.87 |
| CDX91654 | Canola | cytosol, mitochondrion, nucleus, plastid | 52.05 | 56.72 |
| HORVU6Hr1G091860.1 | Barley | plasma membrane | 59.59 | 56.68 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 61.3 | 56.65 |
| KRH31252 | Soybean | nucleus | 60.96 | 56.51 |
| TraesCS6D01G384500.1 | Wheat | nucleus | 59.59 | 56.31 |
| TraesCS6B01G440500.1 | Wheat | nucleus | 59.25 | 56.17 |
| PGSC0003DMT400053912 | Potato | cytosol | 50.68 | 56.06 |
| Bra028311.1-P | Field mustard | cytosol | 35.27 | 54.5 |
| CDY00531 | Canola | cytosol, nucleus, plastid | 34.93 | 54.26 |
| HORVU7Hr1G108780.2 | Barley | nucleus | 58.9 | 53.25 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 30.82 | 50.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 16.1 | 48.45 |
| TraesCS6D01G118100.1 | Wheat | extracellular | 19.18 | 47.06 |
| TraesCS6A01G195300.1 | Wheat | extracellular | 18.15 | 44.54 |
| Zm00001d050515_P001 | Maize | cytosol | 22.95 | 40.61 |
| TraesCS4B01G122500.1 | Wheat | cytosol | 14.73 | 33.08 |
| Zm00001d053525_P001 | Maize | cytosol | 12.67 | 31.09 |
| Zm00001d001875_P001 | Maize | nucleus | 14.73 | 28.67 |
| Zm00001d023745_P001 | Maize | nucleus | 14.73 | 28.67 |
| Zm00001d044114_P001 | Maize | nucleus | 14.38 | 28.0 |
| Zm00001d051885_P001 | Maize | plasma membrane, plastid | 57.19 | 26.85 |
| Zm00001d036744_P001 | Maize | nucleus, plastid | 20.21 | 25.32 |
| Zm00001d049508_P002 | Maize | plastid | 14.38 | 23.08 |
| Zm00001d037391_P001 | Maize | cytosol | 19.18 | 22.67 |
| Zm00001d049509_P001 | Maize | plastid | 10.96 | 21.48 |
| TraesCS2B01G578600.1 | Wheat | plastid | 19.52 | 17.22 |
Protein Annotations
| MapMan:17.1.1.2.1.5.1 | Gene3D:3.30.200.20 | Gene3D:3.40.50.150 | EntrezGene:835325 | ProteinID:AED96221.1 | ArrayExpress:AT5G52490 |
| EnsemblPlantsGene:AT5G52490 | RefSeq:AT5G52490 | TAIR:AT5G52490 | RefSeq:AT5G52490-TAIR-G | EnsemblPlants:AT5G52490.1 | TAIR:AT5G52490.1 |
| Unigene:At.55506 | ProteinID:BAB10546.1 | InterPro:Fibrillarin | GO:GO:0000494 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0006464 |
| GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008649 | GO:GO:0009987 |
| GO:GO:0015030 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0030529 | GO:GO:0031167 |
| GO:GO:0031428 | GO:GO:0032040 | GO:GO:0032259 | GO:GO:1990258 | GO:GO:1990259 | RefSeq:NP_568773.1 |
| PFAM:PF01269 | PIRSF:PIRSF006540 | PRINTS:PR00052 | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF6 | UniProt:Q9FHB3 |
| InterPro:SAM-dependent_MTases | SMART:SM01206 | SUPFAM:SSF53335 | UniParc:UPI00000A2BD7 | SEG:seg | : |
Description
FIB3Putative rRNA 2'-O-methyltransferase fibrillarin 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHB3]
Coordinates
chr5:+:21298857..21300239
Molecular Weight (calculated)
31708.2 Da
IEP (calculated)
9.611
GRAVY (calculated)
-0.320
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPPQRGRGG GVRGGRGLAR GGEGSAVRGS GRGGESGRGR GPGRVKSESD GGIKGGSKVL VTPHRHAGVF VAKSKADALV TKNLVPGEII YNEKRIFVQN
101: EDRSTVEYRV WNPHRSKLAD AITTGVDNIW IKPGVKVLYL GASSGYTVSH VSDIVGPEGC VYAVEHSDIC GKVLMNMAEK RTNVIPIIED ARHPAKYRML
201: VGMVDIIFSD VNHPEQANIL SLNASYFLKS GGHFMISIKA NSIDSTIAAE TVYQMEVEKL QMEELRPTEI LHLDSCEEKH ACVFGGYRLP RK
101: EDRSTVEYRV WNPHRSKLAD AITTGVDNIW IKPGVKVLYL GASSGYTVSH VSDIVGPEGC VYAVEHSDIC GKVLMNMAEK RTNVIPIIED ARHPAKYRML
201: VGMVDIIFSD VNHPEQANIL SLNASYFLKS GGHFMISIKA NSIDSTIAAE TVYQMEVEKL QMEELRPTEI LHLDSCEEKH ACVFGGYRLP RK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.