Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G196000.2 | |
| TraesCS5B01G187400.1 | |
| TraesCS5D01G195000.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d053525_P001 | Maize | cytosol | 33.08 | 36.13 |
| Zm00001d014473_P001 | Maize | cytosol | 28.46 | 33.04 |
| Zm00001d051631_P001 | Maize | cytosol | 28.46 | 32.74 |
| Zm00001d050515_P001 | Maize | cytosol | 29.23 | 23.03 |
| TraesCS7B01G382200.1 | Wheat | nucleus | 47.69 | 21.6 |
| PGSC0003DMT400010997 | Potato | cytosol | 24.62 | 21.33 |
| TraesCS6B01G440500.1 | Wheat | nucleus | 48.46 | 20.45 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 26.92 | 19.44 |
| GSMUA_Achr7P04500_001 | Banana | cytosol | 36.15 | 19.03 |
| KRH63857 | Soybean | nucleus | 41.54 | 17.65 |
| Bra010455.1-P | Field mustard | cytosol | 38.46 | 17.18 |
| KRH54109 | Soybean | endoplasmic reticulum | 40.0 | 17.05 |
| Bra019148.1-P | Field mustard | cytosol | 40.0 | 16.94 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 40.77 | 16.77 |
| AT4G25630.1 | Thale cress | nucleus, plastid | 40.77 | 16.56 |
| Solyc03g025270.2.1 | Tomato | nucleus | 40.0 | 16.56 |
| KRH31252 | Soybean | nucleus | 40.0 | 16.51 |
| Bra022595.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 36.92 | 16.49 |
| KRG97622 | Soybean | nucleus | 39.23 | 16.29 |
| PGSC0003DMT400053912 | Potato | cytosol | 33.08 | 16.29 |
| PGSC0003DMT400026234 | Potato | nucleus | 39.23 | 16.24 |
| AT5G52470.1 | Thale cress | nucleus | 36.15 | 15.26 |
| Bra013905.1-P | Field mustard | nucleus | 36.15 | 15.16 |
| Bra028311.1-P | Field mustard | cytosol | 21.54 | 14.81 |
| AT5G52490.1 | Thale cress | cytosol | 33.08 | 14.73 |
| CDY27815 | Canola | cytosol, nucleus, plastid | 3.85 | 9.8 |
| GSMUA_AchrUn_... | Banana | cytosol | 6.15 | 8.25 |
| TraesCS2B01G578600.1 | Wheat | plastid | 7.69 | 3.02 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G122500.1 | EnsemblPlantsGene:TraesCS4B01G122500 | Gene3D:3.30.200.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016740 | InterPro:Fibrillarin | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF4 |
| PFAM:PF01269 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:145533780..145534890
Molecular Weight (calculated)
14321.7 Da
IEP (calculated)
10.424
GRAVY (calculated)
-0.124
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRGHGRGGG GRGGPGMKGG RKVVVVPHKH DGVFITKAKE DPLCTKNMVA GESVYGKKSV SVQLFCNLFN YRAYDYVNEA RDLRKKKLFL PMFMSRSITV
101: GVQGMPLIVL SLLSVTNLDS EFFQNSIILD
101: GVQGMPLIVL SLLSVTNLDS EFFQNSIILD
001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQNLGP ECLIFPQNWW TLCYLNQGQL YRLYSCSRSS LPERGEEAAT RAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQNLGP ECLIFPQNWW TLCYLNQGQL YRLYSCSRSS LPERGEEAAT RAV
Arabidopsis Description
MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.