Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g025270.2.1 | Tomato | nucleus | 92.04 | 92.04 |
| GSMUA_Achr7P04500_001 | Banana | cytosol | 71.97 | 91.5 |
| Zm00001d013457_P001 | Maize | cytosol | 11.46 | 90.0 |
| Os02t0821800-02 | Rice | nucleus | 69.11 | 88.57 |
| TraesCS7A01G479900.1 | Wheat | cytosol | 68.15 | 87.7 |
| TraesCS6A01G400300.1 | Wheat | nucleus | 61.15 | 87.67 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.07 | 87.63 |
| TraesCS7B01G382200.1 | Wheat | nucleus | 75.16 | 82.23 |
| PGSC0003DMT400053912 | Potato | cytosol | 68.47 | 81.44 |
| TraesCS6D01G384500.1 | Wheat | nucleus | 79.94 | 81.23 |
| TraesCS7D01G467000.1 | Wheat | nucleus | 74.52 | 80.97 |
| Os05t0176000-01 | Rice | nucleus | 79.3 | 80.58 |
| TraesCS6B01G440500.1 | Wheat | nucleus | 78.34 | 79.87 |
| EES06036 | Sorghum | nucleus | 78.03 | 79.8 |
| HORVU6Hr1G091860.1 | Barley | plasma membrane | 78.03 | 79.8 |
| KXG20767 | Sorghum | nucleus | 50.96 | 77.67 |
| PGSC0003DMT400010997 | Potato | cytosol | 35.99 | 75.33 |
| HORVU5Hr1G060300.1 | Barley | cytosol, golgi, mitochondrion, nucleus | 9.55 | 75.0 |
| HORVU7Hr1G108780.2 | Barley | nucleus | 76.43 | 74.3 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 38.22 | 66.67 |
| Zm00001d014473_P001 | Maize | cytosol | 23.57 | 66.07 |
| Zm00001d051631_P001 | Maize | cytosol | 23.57 | 65.49 |
| TraesCS6D01G118100.1 | Wheat | extracellular | 22.29 | 58.82 |
| TraesCS6A01G195300.1 | Wheat | extracellular | 21.97 | 57.98 |
| Zm00001d050515_P001 | Maize | cytosol | 24.2 | 46.06 |
| TraesCS4B01G122500.1 | Wheat | cytosol | 16.24 | 39.23 |
| Zm00001d051885_P001 | Maize | plasma membrane, plastid | 73.25 | 36.98 |
| Zm00001d053525_P001 | Maize | cytosol | 13.06 | 34.45 |
| Zm00001d049509_P001 | Maize | plastid | 14.65 | 30.87 |
| Zm00001d049508_P002 | Maize | plastid | 17.83 | 30.77 |
| Zm00001d036744_P001 | Maize | nucleus, plastid | 22.29 | 30.04 |
| Zm00001d001875_P001 | Maize | nucleus | 14.33 | 30.0 |
| Zm00001d023745_P001 | Maize | nucleus | 14.33 | 30.0 |
| Zm00001d044114_P001 | Maize | nucleus | 14.33 | 30.0 |
| Zm00001d037391_P001 | Maize | cytosol | 21.02 | 26.72 |
| TraesCS2B01G578600.1 | Wheat | plastid | 24.84 | 23.57 |
Protein Annotations
| EntrezGene:102584645 | MapMan:17.1.1.2.1.5.1 | Gene3D:3.30.200.20 | Gene3D:3.40.50.150 | InterPro:Fibrillarin | InterPro:Fibrillarin_CS |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006364 | GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0032259 | UniProt:M1AMW1 | HAMAP:MF_00351 | PFAM:PF01269 | EnsemblPlantsGene:PGSC0003DMG400010119 |
| PGSC:PGSC0003DMG400010119 | EnsemblPlants:PGSC0003DMT400026234 | PIRSF:PIRSF006540 | PRINTS:PR00052 | ScanProsite:PS00566 | PANTHER:PTHR10335 |
| PANTHER:PTHR10335:SF4 | InterPro:SAM-dependent_MTases | SMART:SM01206 | SUPFAM:SSF53335 | UniParc:UPI000295797D | RefSeq:XP_006353900.1 |
| SEG:seg | : | : | : | : | : |
Description
Fibrillarin homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400010119]
Coordinates
chr3:+:43661736..43664809
Molecular Weight (calculated)
33012.7 Da
IEP (calculated)
10.775
GRAVY (calculated)
-0.345
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAPTRGRGG GGFRGGRGDG GGRGGRGGRG GFSGGRGGFG SGGSGMKRGG GRGGRGDRGG RGGGRGRGGM KGGSRVVVEP HRHGGVFIAK GKEDALCTKN
101: LVPGEAVYNE KRISVQNEDG TKVEYRVWNP FRSKLAAAIL GGVDDIWIKP GARVLYLGAA SGTTVSHVSD LVGPDGVVYA VEFSHRSGRD LVNMAKKRTN
201: VIPIIEDARH PAKYRMLVGM VDVIFSDVAQ PDQARILALN ASYFLKAGGH FVISIKANCI DSTVPAEAVF AQEVKKLQAD QFKPVEQVTL EPFERDHACV
301: VGTYRVPKKQ KAAA
101: LVPGEAVYNE KRISVQNEDG TKVEYRVWNP FRSKLAAAIL GGVDDIWIKP GARVLYLGAA SGTTVSHVSD LVGPDGVVYA VEFSHRSGRD LVNMAKKRTN
201: VIPIIEDARH PAKYRMLVGM VDVIFSDVAQ PDQARILALN ASYFLKAGGH FVISIKANCI DSTVPAEAVF AQEVKKLQAD QFKPVEQVTL EPFERDHACV
301: VGTYRVPKKQ KAAA
001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA
Arabidopsis Description
MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.