CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER98789

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	EER98789	AT2G19670.1	17666011
AT4G25630.1	EER98789	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P04500_001	Banana	cytosol	77.18	64.37
PGSC0003DMT400010997	Potato	cytosol	46.6	64.0
PGSC0003DMT400077477	Potato	extracellular, golgi	49.03	56.11
EES06036	Sorghum	nucleus	82.52	55.37
Bra010455.1-P	Field mustard	cytosol	76.7	54.3
AT5G52470.1	Thale cress	nucleus	78.16	52.27
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	72.33	51.2
PGSC0003DMT400053912	Potato	cytosol	65.53	51.14
Solyc03g025270.2.1	Tomato	nucleus	77.67	50.96
PGSC0003DMT400026234	Potato	nucleus	77.67	50.96
KRH63857	Soybean	nucleus	75.24	50.65
KRH54109	Soybean	endoplasmic reticulum	74.76	50.49
Bra019148.1-P	Field mustard	cytosol	75.24	50.49
VIT_16s0050g00880.t01	Wine grape	nucleus	76.7	50.0
AT4G25630.1	Thale cress	nucleus, plastid	77.67	50.0
KRH31252	Soybean	nucleus	75.73	49.52
KRG97622	Soybean	nucleus	75.24	49.52
Bra013905.1-P	Field mustard	nucleus	74.27	49.35
AT5G52490.1	Thale cress	cytosol	65.53	46.23
Bra028311.1-P	Field mustard	cytosol	38.35	41.8
GSMUA_AchrUn_...	Banana	cytosol	12.62	26.8
CDY27815	Canola	cytosol, nucleus, plastid	2.91	11.76

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	UniProt:A0A194YLE4	InterPro:Fibrillarin	InterPro:Fibrillarin_CS
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006364	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987
GO:GO:0016740	GO:GO:0032259	EnsemblPlants:KXG20767	ProteinID:KXG20767	ProteinID:KXG20767.1	PFAM:PF01269
PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335	PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases
SMART:SM01206	EnsemblPlantsGene:SORBI_3010G250700	SUPFAM:SSF53335	UniParc:UPI0007F25919	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:58971767..58975660

Molecular Weight (calculated)

22476.0 Da

IEP (calculated)

9.933

GRAVY (calculated)

-0.320

Length

206 amino acids

Sequence
(BLAST)

001: MCRPPRGRAP AGSRRGGGGM RGGSNVVVDP HKHKGVFVAR AKEDALCTRN MNPGESVYGE KRVSVQKEDG TKVEYRVWNP FRSKLAAAVL GGVDNIWIAP
101: GQRVLYLGAA SGTTVSHVSD IVGPEGLVYA VEFSHRSGRD LVNMAKKRTN VIPIIEDARH PARYRMLVGM VDVIFSDVAQ PDQARILALN ASFPEEWRPL
201: CDLDQG

Best Arabidopsis Sequence Match ( AT5G52470.1 )
(BLAST)

001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS

Arabidopsis Description

MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.