Factsheet for PGSC0003DMT400053912

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000915
PGSC0003DMT400021726

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	PGSC0003DMT400000915	AT2G19670.1	17666011
AT4G25630.1	PGSC0003DMT400021726	AT2G19670.1	17666011
AT4G25630.1	PGSC0003DMT400000915	AT4G29510.1	17666011
AT4G25630.1	PGSC0003DMT400021726	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013457_P001	Maize	cytosol	12.12	80.0
PGSC0003DMT400026234	Potato	nucleus	81.44	68.47
PGSC0003DMT400010997	Potato	cytosol	38.26	67.33
KXG20767	Sorghum	nucleus	51.14	65.53
Bra010455.1-P	Field mustard	cytosol	70.83	64.26
TraesCS7A01G479900.1	Wheat	cytosol	58.71	63.52
Os02t0821800-02	Rice	nucleus	58.71	63.27
CDX94434	Canola	cytosol	61.74	62.93
GSMUA_Achr7P04500_001	Banana	cytosol	58.71	62.75
KRH63857	Soybean	nucleus	70.45	60.78
KRH54109	Soybean	endoplasmic reticulum	69.7	60.33
KRH31252	Soybean	nucleus	71.97	60.32
TraesCS7B01G382200.1	Wheat	nucleus	65.53	60.28
TraesCS6A01G400300.1	Wheat	nucleus	50.0	60.27
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	9.09	60.0
Bra019148.1-P	Field mustard	cytosol	69.7	59.93
TraesCS7D01G467000.1	Wheat	nucleus	65.15	59.52
CDY50191	Canola	mitochondrion	70.45	59.42
CDX92724	Canola	nucleus, plastid	68.18	59.02
KRG97622	Soybean	nucleus	69.7	58.79
Os05t0176000-01	Rice	nucleus	68.56	58.58
TraesCS6D01G384500.1	Wheat	nucleus	68.56	58.58
AT5G52470.1	Thale cress	nucleus	68.18	58.44
EES06036	Sorghum	nucleus	67.8	58.31
VIT_16s0050g00880.t01	Wine grape	nucleus	69.7	58.23
AT4G25630.1	Thale cress	nucleus, plastid	70.45	58.12
CDY52366	Canola	nucleus	70.83	58.07
PGSC0003DMT400077477	Potato	extracellular, golgi	39.39	57.78
Bra013905.1-P	Field mustard	nucleus	67.8	57.74
CDX89407	Canola	nucleus	67.8	57.74
Zm00001d051631_P001	Maize	cytosol	24.62	57.52
Zm00001d014473_P001	Maize	cytosol	24.24	57.14
TraesCS6B01G440500.1	Wheat	nucleus	66.67	57.14
HORVU6Hr1G091860.1	Barley	plasma membrane	66.29	57.0
CDY27819	Canola	cytosol	43.18	56.72
CDX94433	Canola	nucleus	67.8	56.65
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	60.98	55.33
HORVU7Hr1G108780.2	Barley	nucleus	67.42	55.11
CDY27064	Canola	cytosol	60.61	54.98
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	54.92	54.1
TraesCS6D01G118100.1	Wheat	extracellular	23.48	52.1
AT5G52490.1	Thale cress	cytosol	56.06	50.68
TraesCS6A01G195300.1	Wheat	extracellular	22.73	50.42
CDY00531	Canola	cytosol, nucleus, plastid	29.55	41.49
Bra028311.1-P	Field mustard	cytosol	29.55	41.27
Zm00001d050515_P001	Maize	cytosol	23.86	38.18
GSMUA_AchrUn_...	Banana	cytosol	14.02	38.14
TraesCS4B01G122500.1	Wheat	cytosol	16.29	33.08
Zm00001d051885_P001	Maize	plasma membrane, plastid	67.8	28.78
Zm00001d053525_P001	Maize	cytosol	12.88	28.57
Zm00001d036744_P001	Maize	nucleus, plastid	21.97	24.89
Zm00001d001875_P001	Maize	nucleus	13.26	23.33
Zm00001d023745_P001	Maize	nucleus	13.26	23.33
Zm00001d044114_P001	Maize	nucleus	13.26	23.33
Zm00001d049508_P002	Maize	plastid	15.53	22.53
Zm00001d037391_P001	Maize	cytosol	20.83	22.27
Zm00001d049509_P001	Maize	plastid	12.5	22.15
TraesCS2B01G578600.1	Wheat	plastid	26.14	20.85

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259
UniProt:M1BVM1	PFAM:PF01269	EnsemblPlantsGene:PGSC0003DMG400020916	PGSC:PGSC0003DMG400020916	EnsemblPlants:PGSC0003DMT400053912	PIRSF:PIRSF006540
PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335
UniParc:UPI0002955822	SEG:seg	:	:	:	:

Description

Fibrillarin homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400020916]

Coordinates

chr4:-:36586191..36586985

Molecular Weight (calculated)

28300.6 Da

IEP (calculated)

10.765

GRAVY (calculated)

-0.219

Length

264 amino acids

Sequence
(BLAST)

001: MVAPTRGRGG GGFMGGRGDC GGRGGRGGKG GFSGGRGGFR SGGNVMKRGG GRGGGRGRGG MKGGSKVVVE PHRHGGMFTA KCKDDALCTK NLVPGEAVYN
101: EKRIFVQNED GTKVEYRLWN PFRSNLVPAF LGGVYDIWIK PGARVLFLVA ASGKKVSHVS DIVGPDGVVY AVKFSHRSGR DLVYMAKKCT NVIPIIEDAK
201: HPSKYKMLVG MVDLIFSDVA QPDQARILVL NASYFLNVGG HFVISIKANC IVQQCQRKSY FLRK

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.