Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d020188_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25630.1 | Zm00001d020188_P001 | AT2G19670.1 | 17666011 |
| AT4G25630.1 | Zm00001d020188_P001 | AT4G29510.1 | 17666011 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023745_P001 | Maize | nucleus | 100.0 | 100.0 |
| Zm00001d013457_P001 | Maize | cytosol | 26.0 | 97.5 |
| Zm00001d044114_P001 | Maize | nucleus | 97.33 | 97.33 |
| Zm00001d036744_P001 | Maize | nucleus, plastid | 100.0 | 64.38 |
| KRH54109 | Soybean | endoplasmic reticulum | 31.33 | 15.41 |
| Zm00001d037391_P001 | Maize | cytosol | 25.33 | 15.38 |
| KRH63857 | Soybean | nucleus | 31.33 | 15.36 |
| AT5G52470.1 | Thale cress | nucleus | 31.33 | 15.26 |
| KRG97622 | Soybean | nucleus | 31.33 | 15.02 |
| KRH31252 | Soybean | nucleus | 31.33 | 14.92 |
| Bra022595.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 28.67 | 14.78 |
| Bra010455.1-P | Field mustard | cytosol | 28.67 | 14.78 |
| AT5G52490.1 | Thale cress | cytosol | 28.67 | 14.73 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 30.67 | 14.56 |
| AT4G25630.1 | Thale cress | nucleus, plastid | 30.67 | 14.38 |
| Bra019148.1-P | Field mustard | cytosol | 29.33 | 14.33 |
| Solyc03g025270.2.1 | Tomato | nucleus | 30.0 | 14.33 |
| PGSC0003DMT400026234 | Potato | nucleus | 30.0 | 14.33 |
| TraesCS6A01G195300.1 | Wheat | extracellular | 11.33 | 14.29 |
| Bra013905.1-P | Field mustard | nucleus | 28.67 | 13.87 |
| PGSC0003DMT400053912 | Potato | cytosol | 23.33 | 13.26 |
| TraesCS6D01G118100.1 | Wheat | extracellular | 10.0 | 12.61 |
| Bra028311.1-P | Field mustard | cytosol | 14.67 | 11.64 |
| Zm00001d051885_P001 | Maize | plasma membrane, plastid | 32.0 | 7.72 |
| PGSC0003DMT400010997 | Potato | cytosol | 7.33 | 7.33 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 8.0 | 6.67 |
| Zm00001d049508_P002 | Maize | plastid | 7.33 | 6.04 |
| Zm00001d049509_P001 | Maize | plastid | 6.0 | 6.04 |
| TraesCS2B01G578600.1 | Wheat | plastid | 10.67 | 4.83 |
| Zm00001d053525_P001 | Maize | cytosol | 2.0 | 2.52 |
| Zm00001d014473_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d050515_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d051631_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:35.1 | UniProt:A0A1D6DTS8 | ProteinID:AQK39956.1 | InterPro:Fibrillarin | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006364 |
| GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0032259 | ProteinID:ONM12248.1 | PFAM:PF01269 | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF6 | InterPro:SAM-dependent_MTases |
| SMART:SM01206 | SUPFAM:SSF53335 | UniParc:UPI000843B79C | EnsemblPlantsGene:Zm00001d001875 | EnsemblPlants:Zm00001d001875_P001 | EnsemblPlants:Zm00001d001875_T001 |
Description
Mediator of RNA polymerase II transcription subunit 36a
Coordinates
chr2:+:2215926..2218102
Molecular Weight (calculated)
16926.4 Da
IEP (calculated)
4.963
GRAVY (calculated)
-0.161
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKRTNVIP IIEDVRHPAR YQMLVGMVDV IFSDVAQPNQ THENSEDIVF LQPLDNKIYI LVKLVLTQYL IPRLQAQDSK RDYLDHSSGS GVGLYGCTEC
101: EADVVALIEE EVSRVGEAAR RFEWIGGEVL LFLPLQSQQI LNGNTSPRSR
101: EADVVALIEE EVSRVGEAAR RFEWIGGEVL LFLPLQSQQI LNGNTSPRSR
001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQNLGP ECLIFPQNWW TLCYLNQGQL YRLYSCSRSS LPERGEEAAT RAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQNLGP ECLIFPQNWW TLCYLNQGQL YRLYSCSRSS LPERGEEAAT RAV
Arabidopsis Description
MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.