Factsheet for Zm00001d051885_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d020188_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	Zm00001d020188_P001	AT2G19670.1	17666011
AT4G25630.1	Zm00001d020188_P001	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013457_P001	Maize	cytosol	5.95	92.5
EES06036	Sorghum	nucleus	44.53	90.23
Os02t0821800-02	Rice	nucleus	34.41	87.35
TraesCS7A01G479900.1	Wheat	cytosol	33.76	86.07
TraesCS6A01G400300.1	Wheat	nucleus	30.06	85.39
TraesCS7D01G467000.1	Wheat	nucleus	38.59	83.05
TraesCS7B01G382200.1	Wheat	nucleus	38.1	82.58
Os05t0176000-01	Rice	nucleus	39.71	79.94
HORVU6Hr1G091860.1	Barley	plasma membrane	39.23	79.48
Zm00001d014473_P001	Maize	cytosol	14.15	78.57
TraesCS6B01G440500.1	Wheat	nucleus	38.91	78.57
TraesCS6D01G384500.1	Wheat	nucleus	38.75	77.99
Zm00001d051631_P001	Maize	cytosol	13.99	76.99
Bra010455.1-P	Field mustard	cytosol	35.05	74.91
KRH54109	Soybean	endoplasmic reticulum	36.66	74.75
HORVU7Hr1G108780.2	Barley	nucleus	38.59	74.3
KRH63857	Soybean	nucleus	36.5	74.18
AT5G52470.1	Thale cress	nucleus	36.33	73.38
PGSC0003DMT400026234	Potato	nucleus	36.98	73.25
Bra019148.1-P	Field mustard	cytosol	35.85	72.64
KRG97622	Soybean	nucleus	36.5	72.52
VIT_16s0050g00880.t01	Wine grape	nucleus	36.66	72.15
Solyc03g025270.2.1	Tomato	nucleus	36.33	71.97
KRH31252	Soybean	nucleus	36.17	71.43
AT4G25630.1	Thale cress	nucleus, plastid	36.5	70.94
Bra013905.1-P	Field mustard	nucleus	34.73	69.68
PGSC0003DMT400053912	Potato	cytosol	28.78	67.8
PGSC0003DMT400010997	Potato	cytosol	15.92	66.0
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	30.87	65.98
PGSC0003DMT400077477	Potato	extracellular, golgi	16.88	58.33
AT5G52490.1	Thale cress	cytosol	26.85	57.19
Zm00001d050515_P001	Maize	cytosol	14.79	55.76
Bra028311.1-P	Field mustard	cytosol	14.79	48.68
Zm00001d053525_P001	Maize	cytosol	8.68	45.38
Zm00001d049509_P001	Maize	plastid	8.04	33.56
Zm00001d001875_P001	Maize	nucleus	7.72	32.0
Zm00001d023745_P001	Maize	nucleus	7.72	32.0
Zm00001d044114_P001	Maize	nucleus	7.56	31.33
Zm00001d049508_P002	Maize	plastid	9.16	31.32
Zm00001d036744_P001	Maize	nucleus, plastid	11.58	30.9
Zm00001d037391_P001	Maize	cytosol	11.09	27.94

Protein Annotations

EntrezGene:100191636	MapMan:17.1.1.2.1.5.1	MapMan:19.3.4.3	Gene3D:3.30.200.20	Gene3D:3.40.50.150	UniProt:A0A1D6QAN9
ProteinID:AQK55388.1	InterPro:Fibrillarin	InterPro:Fibrillarin_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	HAMAP:MF_00351
PFAM:PF01269	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335	PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases
SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI0008430F2A	EnsemblPlantsGene:Zm00001d051885	EnsemblPlants:Zm00001d051885_P001	EnsemblPlants:Zm00001d051885_T001
SEG:seg	:	:	:	:	:

Description

ATG8-interacting protein 1

Coordinates

chr4:-:173507581..173513457

Molecular Weight (calculated)

65631.8 Da

IEP (calculated)

9.680

GRAVY (calculated)

-0.412

Length

622 amino acids

Sequence
(BLAST)

001: MRPPARGGRG GRGGRFDGGG RGGGGGGRGF GGGRGGRGDR GGRGGRTPRG GRGGGGRGGR GGGMKGGSKA VVVAHKHAGV FISKSKEDAL CTKNMVPGES
101: VYGEKRVSVQ NEDGTKVEYR VWNPFRSKLA AAVLGGVDNI WIAPGTRVLY LGAASGTTVS HVSDIVGPDG LVYAVEFSHR SGRDLVNMAK KRTNVIPIIE
201: DARHPARYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK NGGHFVISIK ANCIDSTLPA EAVFAAEVEK LKADQFKPAE QGAQEAEGHL LGSESVLVLP
301: TKDASLYCGL LRNFEGLVKR PHGSIISLMA VLYCTTASVF AGKEKMEPGQ SGTEQASPRG NDWEVVQLTA SAYAAAPAPR KPEPSDEAEA KRYGAKGDDL
401: AAGLLMSGHF SVSQSEVESL LVGADTKEPP PKDKEEPCEH TKLLEDDVPT IPFDDGKALK GMGLVGEEPA GFSSPVYSSI TESRSDKRSE EPTTLHSFNP
501: VTGSTKVVSP DEQSEPAAGS GSGSGSGPRE AWWKKQLLSL YRNAKESKHL WPIVATTAAL VGLAYLGRRW HKGRLQFQLL KISPSTNKEK ISDAVGPLNR
601: INDILVAGNH PSHGVHGHAR AG

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.