Factsheet for Os02t0821800-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

nucleus: 23777608
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os09t0359800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	Os09t0359800-01	AT2G19670.1	17666011
AT4G25630.1	Os09t0359800-01	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G400300.1	Wheat	nucleus	85.71	95.89
TraesCS7A01G479900.1	Wheat	cytosol	93.88	94.26
GSMUA_Achr7P04500_001	Banana	cytosol	92.24	91.5
GSMUA_AchrUn_...	Banana	cytosol	34.29	86.6
TraesCS7B01G382200.1	Wheat	nucleus	93.88	80.14
TraesCS7D01G467000.1	Wheat	nucleus	93.88	79.58
Os05t0176000-01	Rice	nucleus	98.78	78.32
EES06036	Sorghum	nucleus	94.69	75.57
HORVU6Hr1G091860.1	Barley	plasma membrane	94.69	75.57
TraesCS6D01G384500.1	Wheat	nucleus	95.1	75.4
TraesCS6B01G440500.1	Wheat	nucleus	94.29	75.0
HORVU7Hr1G108780.2	Barley	nucleus	92.65	70.28
KRH63857	Soybean	nucleus	87.76	70.26
KRH54109	Soybean	endoplasmic reticulum	87.35	70.16
AT5G52470.1	Thale cress	nucleus	87.35	69.48
VIT_16s0050g00880.t01	Wine grape	nucleus	89.39	69.3
Solyc03g025270.2.1	Tomato	nucleus	88.57	69.11
PGSC0003DMT400026234	Potato	nucleus	88.57	69.11
KRG97622	Soybean	nucleus	87.76	68.69
PGSC0003DMT400010997	Potato	cytosol	42.04	68.67
KRH31252	Soybean	nucleus	88.16	68.57
Bra019148.1-P	Field mustard	cytosol	84.49	67.43
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	79.18	66.67
AT4G25630.1	Thale cress	nucleus, plastid	86.94	66.56
Bra013905.1-P	Field mustard	nucleus	83.67	66.13
Bra010455.1-P	Field mustard	cytosol	75.51	63.57
PGSC0003DMT400077477	Potato	extracellular, golgi	43.67	59.44
PGSC0003DMT400053912	Potato	cytosol	63.27	58.71
AT5G52490.1	Thale cress	cytosol	62.86	52.74
Bra028311.1-P	Field mustard	cytosol	38.37	49.74
CDY27815	Canola	cytosol, nucleus, plastid	10.2	49.02
Zm00001d051885_P001	Maize	plasma membrane, plastid	87.35	34.41

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	EntrezGene:9266224	UniProt:A0A0N7KGC5	EMBL:AK243312
ProteinID:BAS81633.1	ProteinID:BAS92514.1	ProteinID:EEE62511.1	InterPro:Fibrillarin	InterPro:Fibrillarin_CS	GO:GO:0000494
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730	GO:GO:0006139
GO:GO:0006364	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008649
GO:GO:0009987	GO:GO:0015030	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	GO:GO:0031167
GO:GO:0031428	GO:GO:0032040	GO:GO:0032259	GO:GO:1990258	GO:GO:1990259	HAMAP:MF_00351
EnsemblPlantsGene:Os02g0821800	EnsemblPlants:Os02t0821800-02	PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566
PANTHER:PTHR10335	PANTHER:PTHR10335:SF6	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI0003938726
RefSeq:XP_015640581.1	:	:	:	:	:

Description

Mediator 18_1, Mediator 36_1Similar to Fibrillarin-2. (Os02t0821800-01);Similar to Fibrillarin-2. (Os02t0821800-02)

Coordinates

chr2:+:35271805..35274777

Molecular Weight (calculated)

26743.3 Da

IEP (calculated)

9.677

GRAVY (calculated)

-0.143

Length

245 amino acids

Sequence
(BLAST)

001: MKGGSKVVVV PHKHNGVFIA KAKEDALCTK NMVPGESVYG EKRISVQNED GTKVEYRVWN PFRSKLAAAV LGGVDNIWIA PGTRVLYLGA ASGTTVSHVS
101: DIVGPTGLVY AVEFSHRSGR DLVNMAKKRT NVIPIIEDAR HPARYRMLVG MVDVIFSDVA QPDQARILAL NASYFLKNGG HFVISIKANC IDSTMPAEAV
201: FASEVEKLKA DQFKPSEQVT LEPFERDHAC VVGGYRMPKK QKGTS

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.