CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63857	Soybean	nucleus	89.21	91.83
KRH54109	Soybean	endoplasmic reticulum	88.57	91.48
KRG97622	Soybean	nucleus	89.84	90.42
Zm00001d013457_P001	Maize	cytosol	11.43	90.0
GSMUA_Achr7P04500_001	Banana	cytosol	70.16	89.47
TraesCS6A01G400300.1	Wheat	nucleus	61.59	88.58
Os02t0821800-02	Rice	nucleus	68.57	88.16
TraesCS7A01G479900.1	Wheat	cytosol	67.62	87.3
GSMUA_AchrUn_...	Banana	cytosol	25.71	83.51
VIT_16s0050g00880.t01	Wine grape	nucleus	82.22	81.96
Os05t0176000-01	Rice	nucleus	80.32	81.88
Solyc03g025270.2.1	Tomato	nucleus	80.95	81.21
TraesCS7B01G382200.1	Wheat	nucleus	73.65	80.84
TraesCS7D01G467000.1	Wheat	nucleus	73.02	79.58
TraesCS6D01G384500.1	Wheat	nucleus	77.14	78.64
HORVU6Hr1G091860.1	Barley	plasma membrane	76.19	78.18
EES06036	Sorghum	nucleus	76.19	78.18
TraesCS6B01G440500.1	Wheat	nucleus	76.19	77.92
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	9.84	77.5
KXG20767	Sorghum	nucleus	49.52	75.73
HORVU7Hr1G108780.2	Barley	nucleus	75.56	73.68
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	67.62	73.2
CDY27064	Canola	cytosol	67.3	72.85
PGSC0003DMT400053912	Potato	cytosol	60.32	71.97
PGSC0003DMT400010997	Potato	cytosol	33.97	71.33
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	60.63	71.27
Zm00001d014473_P001	Maize	cytosol	22.86	64.29
PGSC0003DMT400077477	Potato	extracellular, golgi	36.51	63.89
Zm00001d051631_P001	Maize	cytosol	22.86	63.72
CDY27819	Canola	cytosol	40.63	63.68
AT5G52490.1	Thale cress	cytosol	56.51	60.96
TraesCS6D01G118100.1	Wheat	extracellular	21.59	57.14
TraesCS6A01G195300.1	Wheat	extracellular	21.27	56.3
Bra028311.1-P	Field mustard	cytosol	30.48	50.79
CDY00531	Canola	cytosol, nucleus, plastid	30.16	50.53
Zm00001d050515_P001	Maize	cytosol	24.44	46.67
TraesCS4B01G122500.1	Wheat	cytosol	16.51	40.0
Zm00001d053525_P001	Maize	cytosol	13.97	36.97
Zm00001d051885_P001	Maize	plasma membrane, plastid	71.43	36.17
Zm00001d044114_P001	Maize	nucleus	14.92	31.33
Zm00001d023745_P001	Maize	nucleus	14.92	31.33
Zm00001d001875_P001	Maize	nucleus	14.92	31.33
Zm00001d036744_P001	Maize	nucleus, plastid	22.54	30.47
Zm00001d049509_P001	Maize	plastid	13.97	29.53
Zm00001d049508_P002	Maize	plastid	16.83	29.12
Zm00001d037391_P001	Maize	cytosol	20.32	25.91
TraesCS2B01G578600.1	Wheat	plastid	23.49	22.36

Protein Annotations

EntrezGene:100814656	MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	EMBL:ACUP02007133	InterPro:Fibrillarin
InterPro:Fibrillarin_CS	EnsemblPlantsGene:GLYMA_11G237200	GO:GO:0000494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0006464	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008649	GO:GO:0009987	GO:GO:0015030
GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	GO:GO:0031167	GO:GO:0031428	GO:GO:0032040
GO:GO:1990258	GO:GO:1990259	UniProt:K7LRU2	EnsemblPlants:KRH31252	ProteinID:KRH31252	ProteinID:KRH31252.1
HAMAP:MF_00351	PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335
PANTHER:PTHR10335:SF6	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI000233D107	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:33175648..33178869

Molecular Weight (calculated)

33198.8 Da

IEP (calculated)

10.667

GRAVY (calculated)

-0.455

Length

315 amino acids

Sequence
(BLAST)

001: MAPPRGRGGF GGGGGGGFRG GGRGDRGRGR GGGGRGGDRG TPFKARGGGR GGGGRGGGRG GGRGGGRGGM KGGSKVVVQP HRHDGIFIAK GKEDALVTKN
101: LVPGEAVYNE KRITVQNEDG TKEEYRVWNP FRSKLAAAIL GGVDNIWIKP GARVLYLGAA SGTTVSHVSD VVGPTGVVYA VEFSHRSGRD LVNMAKKRTN
201: VIPIIEDARH PAKYRMLVGM VDVIFSDVAQ PDQARILGLN ASYYLKTGGH FVISIKANCI DSTVPAEAVF ESEVNKLKAD QFKPFEQVTL EPFERDHACV
301: VGGYRMPKKK KDAAE

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.