Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d020188_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25630.1 | Zm00001d020188_P001 | AT2G19670.1 | 17666011 |
| AT4G25630.1 | Zm00001d020188_P001 | AT4G29510.1 | 17666011 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051631_P001 | Maize | cytosol | 58.18 | 84.96 |
| Zm00001d014473_P001 | Maize | cytosol | 55.76 | 82.14 |
| Zm00001d053525_P001 | Maize | cytosol | 43.03 | 59.66 |
| PGSC0003DMT400010997 | Potato | cytosol | 30.91 | 34.0 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 34.55 | 31.67 |
| TraesCS4B01G122500.1 | Wheat | cytosol | 23.03 | 29.23 |
| KRH54109 | Soybean | endoplasmic reticulum | 47.27 | 25.57 |
| KRH63857 | Soybean | nucleus | 47.27 | 25.49 |
| KRG97622 | Soybean | nucleus | 47.88 | 25.24 |
| Bra010455.1-P | Field mustard | cytosol | 43.64 | 24.74 |
| KRH31252 | Soybean | nucleus | 46.67 | 24.44 |
| Bra019148.1-P | Field mustard | cytosol | 45.45 | 24.43 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 46.67 | 24.37 |
| AT5G52470.1 | Thale cress | nucleus | 45.45 | 24.35 |
| Solyc03g025270.2.1 | Tomato | nucleus | 46.06 | 24.2 |
| PGSC0003DMT400026234 | Potato | nucleus | 46.06 | 24.2 |
| PGSC0003DMT400053912 | Potato | cytosol | 38.18 | 23.86 |
| AT4G25630.1 | Thale cress | nucleus, plastid | 45.45 | 23.44 |
| Bra013905.1-P | Field mustard | nucleus | 43.64 | 23.23 |
| Bra022595.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 40.61 | 23.02 |
| AT5G52490.1 | Thale cress | cytosol | 40.61 | 22.95 |
| Bra028311.1-P | Field mustard | cytosol | 19.39 | 16.93 |
| Zm00001d051885_P001 | Maize | plasma membrane, plastid | 55.76 | 14.79 |
| Zm00001d049509_P001 | Maize | plastid | 10.91 | 12.08 |
| Zm00001d049508_P002 | Maize | plastid | 10.3 | 9.34 |
| Zm00001d037391_P001 | Maize | cytosol | 12.73 | 8.5 |
| Zm00001d036744_P001 | Maize | nucleus, plastid | 7.27 | 5.15 |
| Zm00001d013457_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d023745_P001 | Maize | nucleus | 0.0 | 0.0 |
| Zm00001d044114_P001 | Maize | nucleus | 0.0 | 0.0 |
| Zm00001d001875_P001 | Maize | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.200.20 | Gene3D:3.40.50.150 | MapMan:35.1 | UniProt:A0A1D6Q1Z6 | ProteinID:AQK52637.1 | InterPro:Fibrillarin |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006364 | GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0032259 | PFAM:PF01269 | PRINTS:PR00052 | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF4 |
| InterPro:SAM-dependent_MTases | SMART:SM01206 | SUPFAM:SSF53335 | UniParc:UPI0008453B30 | EnsemblPlantsGene:Zm00001d050515 | EnsemblPlants:Zm00001d050515_P001 |
| EnsemblPlants:Zm00001d050515_T001 | SEG:seg | : | : | : | : |
Description
Mediator of RNA polymerase II transcription subunit 36a
Coordinates
chr4:+:95608231..95609363
Molecular Weight (calculated)
17964.0 Da
IEP (calculated)
10.813
GRAVY (calculated)
-0.060
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMVVGATVA TDLVVVEVRE EKGGRGGRTP RGGRGGGMNG ESKAVVVVHK HAGVFISKSK EDALCTKNIV SGDSVYGEKR ASIQRSRWVM QIRVSNALMP
101: NEMVWNPFRS KLATIVLGGV DNIWIAPSTR VLYLGVASGT IVSHMSDIQN PFPFIVHMCN DRKKR
101: NEMVWNPFRS KLATIVLGGV DNIWIAPSTR VLYLGVASGT IVSHMSDIQN PFPFIVHMCN DRKKR
001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA
Arabidopsis Description
MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.