Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- vacuole 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00531 | Canola | cytosol, nucleus, plastid | 98.41 | 98.94 |
| Zm00001d013457_P001 | Maize | cytosol | 8.99 | 42.5 |
| TraesCS7A01G479900.1 | Wheat | cytosol | 49.74 | 38.52 |
| GSMUA_Achr7P04500_001 | Banana | cytosol | 50.26 | 38.46 |
| Os02t0821800-02 | Rice | nucleus | 49.74 | 38.37 |
| KXG20767 | Sorghum | nucleus | 41.8 | 38.35 |
| PGSC0003DMT400010997 | Potato | cytosol | 29.63 | 37.33 |
| TraesCS6A01G400300.1 | Wheat | nucleus | 42.86 | 36.99 |
| Bra022595.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 56.08 | 36.43 |
| AT5G52490.1 | Thale cress | cytosol | 54.5 | 35.27 |
| TraesCS7D01G467000.1 | Wheat | nucleus | 50.79 | 33.22 |
| TraesCS7B01G382200.1 | Wheat | nucleus | 50.26 | 33.1 |
| Bra010455.1-P | Field mustard | cytosol | 50.79 | 32.99 |
| Bra019148.1-P | Field mustard | cytosol | 52.91 | 32.57 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 30.69 | 32.22 |
| Solyc03g025270.2.1 | Tomato | nucleus | 53.44 | 32.17 |
| Bra013905.1-P | Field mustard | nucleus | 52.38 | 31.94 |
| Os05t0176000-01 | Rice | nucleus | 51.85 | 31.72 |
| HORVU6Hr1G091860.1 | Barley | plasma membrane | 51.32 | 31.6 |
| EES06036 | Sorghum | nucleus | 51.32 | 31.6 |
| TraesCS6B01G440500.1 | Wheat | nucleus | 50.79 | 31.17 |
| KRH54109 | Soybean | endoplasmic reticulum | 50.26 | 31.15 |
| TraesCS6D01G384500.1 | Wheat | nucleus | 50.79 | 31.07 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 51.85 | 31.01 |
| Zm00001d051631_P001 | Maize | cytosol | 18.52 | 30.97 |
| KRH63857 | Soybean | nucleus | 49.74 | 30.72 |
| KRG97622 | Soybean | nucleus | 50.79 | 30.67 |
| KRH31252 | Soybean | nucleus | 50.79 | 30.48 |
| TraesCS6D01G118100.1 | Wheat | extracellular | 19.05 | 30.25 |
| PGSC0003DMT400053912 | Potato | cytosol | 41.27 | 29.55 |
| Zm00001d014473_P001 | Maize | cytosol | 17.46 | 29.46 |
| HORVU7Hr1G108780.2 | Barley | nucleus | 50.26 | 29.41 |
| TraesCS6A01G195300.1 | Wheat | extracellular | 17.99 | 28.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 13.23 | 25.77 |
| TraesCS4B01G122500.1 | Wheat | cytosol | 14.81 | 21.54 |
| Zm00001d053525_P001 | Maize | cytosol | 12.7 | 20.17 |
| Zm00001d050515_P001 | Maize | cytosol | 16.93 | 19.39 |
| Zm00001d036744_P001 | Maize | nucleus, plastid | 19.58 | 15.88 |
| Zm00001d049509_P001 | Maize | plastid | 12.17 | 15.44 |
| Zm00001d037391_P001 | Maize | cytosol | 19.58 | 14.98 |
| Zm00001d051885_P001 | Maize | plasma membrane, plastid | 48.68 | 14.79 |
| Zm00001d001875_P001 | Maize | nucleus | 11.64 | 14.67 |
| Zm00001d023745_P001 | Maize | nucleus | 11.64 | 14.67 |
| Zm00001d044114_P001 | Maize | nucleus | 11.64 | 14.67 |
| Zm00001d049508_P002 | Maize | plastid | 11.11 | 11.54 |
| TraesCS2B01G578600.1 | Wheat | plastid | 19.05 | 10.88 |
| HORVU5Hr1G060300.1 | Barley | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.200.20 | Gene3D:3.40.50.150 | MapMan:35.1 | EnsemblPlantsGene:Bra028311 | EnsemblPlants:Bra028311.1 | EnsemblPlants:Bra028311.1-P |
| InterPro:Fibrillarin | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008033 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032259 | UniProt:M4EHP6 | PFAM:PF01269 | PRINTS:PR00052 |
| PANTHER:PTHR10335 | PANTHER:PTHR10335:SF6 | InterPro:SAM-dependent_MTases | SMART:SM01206 | SUPFAM:SSF53335 | UniParc:UPI00025439BC |
Description
AT5G52470 (E=2e-025) FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | FIB1 (FIBRILLARIN 1); snoRNA binding
Coordinates
chrA01:-:18708618..18710093
Molecular Weight (calculated)
21176.4 Da
IEP (calculated)
6.682
GRAVY (calculated)
-0.338
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MGARSVIRGS GRTEGGNEGI VTPHRHAGVF MIAKGRDCTI LTKNLVPGKA LYNEERLSVQ NEDGTEVEYR VWDPFRSDLA AAVEGCVYAI EISEKSGREL
101: VNMAKTRPNV IPVIEDARNP AKYKMLAMIL ALNASFFLKT RGHFSLIINA DIHHLTMQPE EVYSNERKKL LEDELRPSEQ VTLEPYAYA
101: VNMAKTRPNV IPVIEDARNP AKYKMLAMIL ALNASFFLKT RGHFSLIINA DIHHLTMQPE EVYSNERKKL LEDELRPSEQ VTLEPYAYA
001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS
Arabidopsis Description
MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.