Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G196000.2 | |
| TraesCS5B01G187400.1 | |
| TraesCS5D01G195000.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G479900.1 | Wheat | cytosol | 96.35 | 86.48 |
| Os02t0821800-02 | Rice | nucleus | 95.89 | 85.71 |
| GSMUA_Achr7P04500_001 | Banana | cytosol | 92.69 | 82.19 |
| HORVU6Hr1G091860.1 | Barley | plasma membrane | 99.54 | 71.01 |
| TraesCS6D01G384500.1 | Wheat | nucleus | 100.0 | 70.87 |
| TraesCS6B01G440500.1 | Wheat | nucleus | 99.09 | 70.45 |
| Os05t0176000-01 | Rice | nucleus | 96.35 | 68.28 |
| EES06036 | Sorghum | nucleus | 92.69 | 66.12 |
| PGSC0003DMT400010997 | Potato | cytosol | 45.21 | 66.0 |
| KRH63857 | Soybean | nucleus | 89.04 | 63.73 |
| KRH54109 | Soybean | endoplasmic reticulum | 88.58 | 63.61 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.85 | 62.89 |
| AT5G52470.1 | Thale cress | nucleus | 87.67 | 62.34 |
| KRG97622 | Soybean | nucleus | 89.04 | 62.3 |
| TraesCS6A01G195300.1 | Wheat | extracellular | 33.79 | 62.18 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 89.04 | 61.71 |
| KRH31252 | Soybean | nucleus | 88.58 | 61.59 |
| PGSC0003DMT400026234 | Potato | nucleus | 87.67 | 61.15 |
| Solyc03g025270.2.1 | Tomato | nucleus | 87.67 | 61.15 |
| Bra019148.1-P | Field mustard | cytosol | 84.47 | 60.26 |
| Bra022595.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 79.0 | 59.45 |
| Bra013905.1-P | Field mustard | nucleus | 84.02 | 59.35 |
| AT4G25630.1 | Thale cress | nucleus, plastid | 85.84 | 58.75 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 47.03 | 57.22 |
| Bra010455.1-P | Field mustard | cytosol | 73.52 | 55.33 |
| PGSC0003DMT400053912 | Potato | cytosol | 60.27 | 50.0 |
| AT5G52490.1 | Thale cress | cytosol | 60.73 | 45.55 |
| CDY27815 | Canola | cytosol, nucleus, plastid | 10.05 | 43.14 |
| Bra028311.1-P | Field mustard | cytosol | 36.99 | 42.86 |
| Zm00001d051885_P001 | Maize | plasma membrane, plastid | 85.39 | 30.06 |
Protein Annotations
| MapMan:17.1.1.2.1.5.1 | Gene3D:3.30.200.20 | Gene3D:3.40.50.150 | InterPro:Fibrillarin | InterPro:Fibrillarin_CS | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006364 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016740 | PFAM:PF01269 |
| PIRSF:PIRSF006540 | PRINTS:PR00052 | ScanProsite:PS00566 | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF6 | InterPro:SAM-dependent_MTases |
| SMART:SM01206 | SUPFAM:SSF53335 | EnsemblPlantsGene:TraesCS6A01G400300 | EnsemblPlants:TraesCS6A01G400300.1 | : | : |
Description
No Description!
Coordinates
chr6A:+:609559041..609561847
Molecular Weight (calculated)
23856.7 Da
IEP (calculated)
8.785
GRAVY (calculated)
-0.196
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGAKVVVV PHKHDGVFIA KAKEDALCTK NMVAGESVYG EKRVSVQNED GSKVEYRVWN PFRSKLAAAV LGGVDNIWIA PGTRVLYLGA ASGTTVSHVS
101: DIVGPTGLVY AVEFSHRSGR DLVNMAKKRT NVIPIIEDAR HPAKYRMLVG MVDVIFSDVA QPDQANCIDS TQAAEAVFAS EVEKLKADQF KPSEQVTLEP
201: FERDHACVVG GYRMPKKQK
101: DIVGPTGLVY AVEFSHRSGR DLVNMAKKRT NVIPIIEDAR HPAKYRMLVG MVDVIFSDVA QPDQANCIDS TQAAEAVFAS EVEKLKADQF KPSEQVTLEP
201: FERDHACVVG GYRMPKKQK
001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQNLGP ECLIFPQNWW TLCYLNQGQL YRLYSCSRSS LPERGEEAAT RAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQNLGP ECLIFPQNWW TLCYLNQGQL YRLYSCSRSS LPERGEEAAT RAV
Arabidopsis Description
MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.