Factsheet for GSMUA_AchrUn_randomP02670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P22570_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	GSMUA_Achr6P22570_001	AT2G19670.1	17666011
AT4G25630.1	GSMUA_Achr6P22570_001	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27815	Canola	cytosol, nucleus, plastid	20.62	39.22
GSMUA_Achr7P04500_001	Banana	cytosol	95.88	37.65
Os02t0821800-02	Rice	nucleus	86.6	34.29
TraesCS7A01G479900.1	Wheat	cytosol	84.54	33.61
TraesCS7B01G382200.1	Wheat	nucleus	84.54	28.57
TraesCS7D01G467000.1	Wheat	nucleus	84.54	28.37
TraesCS6A01G400300.1	Wheat	nucleus	62.89	27.85
VIT_16s0050g00880.t01	Wine grape	nucleus	89.69	27.53
Os05t0176000-01	Rice	nucleus	87.63	27.51
Solyc03g025270.2.1	Tomato	nucleus	88.66	27.39
TraesCS6B01G440500.1	Wheat	nucleus	86.6	27.27
TraesCS6D01G384500.1	Wheat	nucleus	86.6	27.18
PGSC0003DMT400026234	Potato	nucleus	87.63	27.07
AT5G52470.1	Thale cress	nucleus	85.57	26.95
EES06036	Sorghum	nucleus	84.54	26.71
AT4G25630.1	Thale cress	nucleus, plastid	87.63	26.56
KRH54109	Soybean	endoplasmic reticulum	83.51	26.56
KRH63857	Soybean	nucleus	83.51	26.47
KRG97622	Soybean	nucleus	83.51	25.88
Bra019148.1-P	Field mustard	cytosol	81.44	25.73
KRH31252	Soybean	nucleus	83.51	25.71
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	75.26	25.09
Bra013905.1-P	Field mustard	nucleus	79.38	24.84
Zm00001d049509_P001	Maize	plastid	35.05	22.82
Bra010455.1-P	Field mustard	cytosol	59.79	19.93
Zm00001d049508_P002	Maize	plastid	35.05	18.68
AT5G52490.1	Thale cress	cytosol	48.45	16.1
PGSC0003DMT400053912	Potato	cytosol	38.14	14.02
Bra028311.1-P	Field mustard	cytosol	25.77	13.23
KXG20767	Sorghum	nucleus	26.8	12.62
TraesCS4B01G122500.1	Wheat	cytosol	8.25	6.15
TraesCS6A01G195300.1	Wheat	extracellular	0.0	0.0
TraesCS2B01G578600.1	Wheat	plastid	0.0	0.0
PGSC0003DMT400077477	Potato	extracellular, golgi	0.0	0.0
TraesCS6D01G118100.1	Wheat	extracellular	0.0	0.0
PGSC0003DMT400010997	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.150	MapMan:35.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	EnsemblPlantsGene:GSMUA_AchrUn_randomG02670_001
EnsemblPlants:GSMUA_AchrUn_randomP02670_001	EnsemblPlants:GSMUA_AchrUn_randomT02670_001	UniProt:M0U5S9	PFAM:PF01269	PRINTS:PR00052	PANTHER:PTHR10335
PANTHER:PTHR10335:SF6	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI0002948782	:

Description

rRNA 2'-O-methyltransferase fibrillarin 2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG02670_001]

Coordinates

chrchrUn_random:-:12836384..12838191

Molecular Weight (calculated)

10678.8 Da

IEP (calculated)

5.682

GRAVY (calculated)

-0.096

Length

97 amino acids

Sequence
(BLAST)

1: MVDVIFSDVA QPDQARILAL NASYFLKNGG HFVISIKANC IDSTVPAEAV VAQEVKKLQA EQFKPSEQVT LEPFEQDHAC VVGGYRMPKK QKVVTES

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.