Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G196000.2 | |
| TraesCS5B01G187400.1 | |
| TraesCS5D01G195000.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G118100.1 | Wheat | extracellular | 69.75 | 69.75 |
| Zm00001d013457_P001 | Maize | cytosol | 14.29 | 42.5 |
| PGSC0003DMT400010997 | Potato | cytosol | 43.7 | 34.67 |
| TraesCS6A01G400300.1 | Wheat | nucleus | 62.18 | 33.79 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 45.38 | 30.0 |
| GSMUA_Achr7P04500_001 | Banana | cytosol | 61.34 | 29.55 |
| TraesCS7A01G479900.1 | Wheat | cytosol | 59.66 | 29.1 |
| PGSC0003DMT400053912 | Potato | cytosol | 50.42 | 22.73 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 59.66 | 22.47 |
| Bra010455.1-P | Field mustard | cytosol | 54.62 | 22.34 |
| KRH54109 | Soybean | endoplasmic reticulum | 57.14 | 22.3 |
| KRH63857 | Soybean | nucleus | 57.14 | 22.22 |
| Bra022595.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 53.78 | 21.99 |
| PGSC0003DMT400026234 | Potato | nucleus | 57.98 | 21.97 |
| KRG97622 | Soybean | nucleus | 57.14 | 21.73 |
| Solyc03g025270.2.1 | Tomato | nucleus | 57.14 | 21.66 |
| AT5G52470.1 | Thale cress | nucleus | 55.46 | 21.43 |
| KRH31252 | Soybean | nucleus | 56.3 | 21.27 |
| Bra013905.1-P | Field mustard | nucleus | 54.62 | 20.97 |
| Bra019148.1-P | Field mustard | cytosol | 53.78 | 20.85 |
| AT4G25630.1 | Thale cress | nucleus, plastid | 54.62 | 20.31 |
| AT5G52490.1 | Thale cress | cytosol | 44.54 | 18.15 |
| Bra028311.1-P | Field mustard | cytosol | 28.57 | 17.99 |
| TraesCS2B01G578600.1 | Wheat | plastid | 49.58 | 17.82 |
| Zm00001d036744_P001 | Maize | nucleus, plastid | 25.21 | 12.88 |
| Zm00001d037391_P001 | Maize | cytosol | 24.37 | 11.74 |
| Zm00001d001875_P001 | Maize | nucleus | 14.29 | 11.33 |
| Zm00001d023745_P001 | Maize | nucleus | 14.29 | 11.33 |
| Zm00001d044114_P001 | Maize | nucleus | 14.29 | 11.33 |
| CDY27815 | Canola | cytosol, nucleus, plastid | 1.68 | 3.92 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:35.1 | InterPro:Fibrillarin | InterPro:Fibrillarin_CS | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016740 | PFAM:PF01269 | PRINTS:PR00052 |
| ScanProsite:PS00566 | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF6 | InterPro:SAM-dependent_MTases | SMART:SM01206 | SUPFAM:SSF53335 |
| EnsemblPlantsGene:TraesCS6A01G195300 | EnsemblPlants:TraesCS6A01G195300.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:279286602..279287824
Molecular Weight (calculated)
12841.7 Da
IEP (calculated)
6.237
GRAVY (calculated)
0.313
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIGVDLDVA VARLVMLIQS AENCQLEIGE CSRQMFIAVL LIVQNEDASK VEFRAPGTCV LYLGAAFGAT VSHVSDIVGP TGLVYAIEFS HRSGRDLVNM
101: AKKRTNVIPI TEDARHPAK
101: AKKRTNVIPI TEDARHPAK
001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQNLGP ECLIFPQNWW TLCYLNQGQL YRLYSCSRSS LPERGEEAAT RAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQNLGP ECLIFPQNWW TLCYLNQGQL YRLYSCSRSS LPERGEEAAT RAV
Arabidopsis Description
MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.