CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63857	Soybean	nucleus	89.14	91.18
KRH54109	Soybean	endoplasmic reticulum	88.82	91.15
Zm00001d013457_P001	Maize	cytosol	11.5	90.0
GSMUA_Achr7P04500_001	Banana	cytosol	70.93	89.88
KRH31252	Soybean	nucleus	90.42	89.84
TraesCS6A01G400300.1	Wheat	nucleus	62.3	89.04
Os02t0821800-02	Rice	nucleus	68.69	87.76
TraesCS7A01G479900.1	Wheat	cytosol	67.73	86.89
GSMUA_AchrUn_...	Banana	cytosol	25.88	83.51
Os05t0176000-01	Rice	nucleus	82.11	83.17
Solyc03g025270.2.1	Tomato	nucleus	82.11	81.85
VIT_16s0050g00880.t01	Wine grape	nucleus	81.79	81.01
TraesCS7B01G382200.1	Wheat	nucleus	73.48	80.14
TraesCS7D01G467000.1	Wheat	nucleus	73.8	79.93
HORVU6Hr1G091860.1	Barley	plasma membrane	77.0	78.5
TraesCS6D01G384500.1	Wheat	nucleus	77.32	78.32
EES06036	Sorghum	nucleus	76.36	77.85
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	9.9	77.5
TraesCS6B01G440500.1	Wheat	nucleus	76.04	77.27
KXG20767	Sorghum	nucleus	49.52	75.24
HORVU7Hr1G108780.2	Barley	nucleus	75.72	73.37
CDY27064	Canola	cytosol	67.41	72.51
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	67.41	72.51
PGSC0003DMT400010997	Potato	cytosol	33.87	70.67
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	60.38	70.52
PGSC0003DMT400053912	Potato	cytosol	58.79	69.7
Zm00001d014473_P001	Maize	cytosol	23.0	64.29
Zm00001d051631_P001	Maize	cytosol	23.0	63.72
CDY27819	Canola	cytosol	40.89	63.68
PGSC0003DMT400077477	Potato	extracellular, golgi	36.1	62.78
AT5G52490.1	Thale cress	cytosol	56.87	60.96
TraesCS6D01G118100.1	Wheat	extracellular	22.04	57.98
TraesCS6A01G195300.1	Wheat	extracellular	21.73	57.14
Bra028311.1-P	Field mustard	cytosol	30.67	50.79
CDY00531	Canola	cytosol, nucleus, plastid	30.35	50.53
Zm00001d050515_P001	Maize	cytosol	25.24	47.88
TraesCS4B01G122500.1	Wheat	cytosol	16.29	39.23
Zm00001d053525_P001	Maize	cytosol	14.7	38.66
Zm00001d051885_P001	Maize	plasma membrane, plastid	72.52	36.5
Zm00001d044114_P001	Maize	nucleus	15.02	31.33
Zm00001d023745_P001	Maize	nucleus	15.02	31.33
Zm00001d001875_P001	Maize	nucleus	15.02	31.33
Zm00001d036744_P001	Maize	nucleus, plastid	22.68	30.47
Zm00001d049509_P001	Maize	plastid	14.06	29.53
Zm00001d049508_P002	Maize	plastid	16.93	29.12
Zm00001d037391_P001	Maize	cytosol	21.09	26.72
TraesCS2B01G578600.1	Wheat	plastid	24.92	23.57

Protein Annotations

EntrezGene:100789137	MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	EMBL:ACUP02010803	InterPro:Fibrillarin
InterPro:Fibrillarin_CS	EnsemblPlantsGene:GLYMA_18G020000	GO:GO:0000494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005730	GO:GO:0006139	GO:GO:0006364	GO:GO:0006464	GO:GO:0008033
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008649	GO:GO:0009987	GO:GO:0015030
GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	GO:GO:0031167	GO:GO:0031428	GO:GO:0032040
GO:GO:1990258	GO:GO:1990259	UniProt:I1MYV4	EnsemblPlants:KRG97622	ProteinID:KRG97622	ProteinID:KRG97622.1
HAMAP:MF_00351	PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335
PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI000233ECB0	SEG:seg

Description

hypothetical protein

Coordinates

chr18:-:1474107..1477142

Molecular Weight (calculated)

33026.6 Da

IEP (calculated)

10.667

GRAVY (calculated)

-0.447

Length

313 amino acids

Sequence
(BLAST)

001: MAPPRGRGGF GGGGGFRGGG RGDRGRGRGG GGRGGDRGTP FKARGGGRGG GGRGGGRGGG RGGGRGGMKG GSKVVVQPHR HDGIFIAKGK EDALVTKNLV
101: PGEAVYNEKR ITVQNEDGSK DEYRVWNPFR SKLAAAILGG VDNIWIKPGA RVLYLGAASG TTVSHVSDVV GPTGVVYAVE FSHRSGRDLV NMAKKRTNVI
201: PIIEDARHPA KYRMLVGMVD VIFSDVAQPD QARILGLNAS YYLKAGGHFV ISIKANCIDS TVPAEAVFES EVNKLKADQF KPFEQVTLEP FERDHACVVG
301: GYRMPKKKKD AAE

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.