CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028311.1-P	Field mustard	cytosol	98.94	98.41
CDY27819	Canola	cytosol	64.89	60.7
PGSC0003DMT400010997	Potato	cytosol	29.79	37.33
CDY27064	Canola	cytosol	55.32	35.74
AT5G52490.1	Thale cress	cytosol	54.26	34.93
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	48.4	33.96
CDX92724	Canola	nucleus, plastid	54.79	33.77
CDX94433	Canola	nucleus	54.79	32.59
PGSC0003DMT400077477	Potato	extracellular, golgi	30.85	32.22
CDY50191	Canola	mitochondrion	53.19	31.95
CDX89407	Canola	nucleus	52.66	31.94
Solyc03g025270.2.1	Tomato	nucleus	53.19	31.85
CDY52366	Canola	nucleus	54.26	31.68
KRH54109	Soybean	endoplasmic reticulum	50.53	31.15
KRH63857	Soybean	nucleus	50.0	30.72
VIT_16s0050g00880.t01	Wine grape	nucleus	51.6	30.7
KRG97622	Soybean	nucleus	50.53	30.35
KRH31252	Soybean	nucleus	50.53	30.16
CDX94434	Canola	cytosol	41.49	30.12
PGSC0003DMT400053912	Potato	cytosol	41.49	29.55
CDY27815	Canola	cytosol, nucleus, plastid	3.19	11.76

Protein Annotations

Gene3D:3.30.200.20	Gene3D:3.40.50.150	MapMan:35.1	GO:A0A078EHE6	EnsemblPlants:CDY00531	ProteinID:CDY00531
ProteinID:CDY00531.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00110270001	PFAM:PF01269	PRINTS:PR00052	PANTHER:PTHR10335
PANTHER:PTHR10335:SF6	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	UniParc:UPI0004EF06CB	:

Description

BnaA10g07420D

Coordinates

chrLK031919:+:1141041..1142453

Molecular Weight (calculated)

21161.5 Da

IEP (calculated)

6.682

GRAVY (calculated)

-0.327

Length

188 amino acids

Sequence
(BLAST)

001: MLRSVIRGSG RTEGGNEGIV TPHRHAGVFM IAKGRDCTIL TKNLVPGKAL YNEERLSVQN EDGTEVEYRV WDPFRSDLAA AVEGCVYAIE ISEKSGRELV
101: NMAKTRPNVI PVIEDARNPA KYKMLAMILA LNASFFLKTR GHFSLIINAD IHHLTMQPEE VYSNERKKLL EDELRPSEQV TLEPYAYA

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.