CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89407	Canola	nucleus	92.72	94.52
CDY50191	Canola	mitochondrion	88.29	89.14
CDX92724	Canola	nucleus, plastid	85.44	88.52
CDY52366	Canola	nucleus	90.19	88.51
AT5G52470.1	Thale cress	nucleus	84.18	86.36
CDX94434	Canola	cytosol	67.72	82.63
Solyc03g025270.2.1	Tomato	nucleus	79.11	79.62
VIT_16s0050g00880.t01	Wine grape	nucleus	77.53	77.53
CDY27064	Canola	cytosol	69.3	75.26
CDX91654	Canola	cytosol, mitochondrion, nucleus, plastid	62.97	74.25
PGSC0003DMT400010997	Potato	cytosol	32.91	69.33
PGSC0003DMT400053912	Potato	cytosol	56.65	67.8
CDY27819	Canola	cytosol	42.72	67.16
PGSC0003DMT400077477	Potato	extracellular, golgi	35.44	62.22
CDY27815	Canola	cytosol, nucleus, plastid	9.49	58.82
CDY00531	Canola	cytosol, nucleus, plastid	32.59	54.79

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	GO:A0A078E4S1	EnsemblPlants:CDX94433	ProteinID:CDX94433
ProteinID:CDX94433.1	InterPro:Fibrillarin	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00157577001	HAMAP:MF_00351	PFAM:PF01269	PIRSF:PIRSF006540
PRINTS:PR00052	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6	InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335
UniParc:UPI0004EDBBB3	SEG:seg	:	:	:	:

Description

BnaC01g17510D

Coordinates

chrLK031881:-:1125394..1127800

Molecular Weight (calculated)

33400.1 Da

IEP (calculated)

10.809

GRAVY (calculated)

-0.391

Length

316 amino acids

Sequence
(BLAST)

001: MRPPLTGGRG GGGFSGGRGG GGFSGGRSGG RGRAGGRGFG DRGGGGGRSG RGMRGRGERG RNGRGAPGRG GMKGGSKVIV EPHRHPGVFI AKGKEDALVT
101: KNLVPGEAVY NEKRISVQNE DGTKTEYRVW NPFRSKLAAA ILGGVDNIYI KPGAKVLYLG AASGTTVSHV SDIVGPEGCV YAVEFSHRSG RDLVNMAKKR
201: TNIIPIIEDA RHPAKYRMLV GMVDVVFADV AQPDQARIVA LNSSFFLKTG GHFIISIKAN CIDSTVPAEA VFQSEVKKLQ QEQFKPAEQV TLEPFERDHA
301: CVVGTYRAPK KTKVAA

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.