Factsheet for TraesCS6D01G384500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 16595579
nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G196000.2
TraesCS5B01G187400.1
TraesCS5D01G195000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	TraesCS5A01G196000.2	AT2G19670.1	17666011
AT4G25630.1	TraesCS5B01G187400.1	AT2G19670.1	17666011
AT4G25630.1	TraesCS5D01G195000.1	AT2G19670.1	17666011
AT4G25630.1	TraesCS5A01G196000.2	AT4G29510.1	17666011
AT4G25630.1	TraesCS5B01G187400.1	AT4G29510.1	17666011
AT4G25630.1	TraesCS5D01G195000.1	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G400300.1	Wheat	nucleus	70.87	100.0
TraesCS6B01G440500.1	Wheat	nucleus	96.76	97.08
Os02t0821800-02	Rice	nucleus	75.4	95.1
HORVU6Hr1G091860.1	Barley	plasma membrane	91.59	92.18
GSMUA_Achr7P04500_001	Banana	cytosol	73.14	91.5
TraesCS7D01G467000.1	Wheat	nucleus	84.47	90.31
GSMUA_AchrUn_...	Banana	cytosol	27.18	86.6
Os05t0176000-01	Rice	nucleus	86.41	86.41
EES06036	Sorghum	nucleus	83.5	84.04
KRH63857	Soybean	nucleus	79.29	80.07
KRH54109	Soybean	endoplasmic reticulum	78.96	80.0
PGSC0003DMT400026234	Potato	nucleus	81.23	79.94
VIT_16s0050g00880.t01	Wine grape	nucleus	80.91	79.11
Solyc03g025270.2.1	Tomato	nucleus	79.94	78.66
KRG97622	Soybean	nucleus	78.32	77.32
KRH31252	Soybean	nucleus	78.64	77.14
AT5G52470.1	Thale cress	nucleus	76.05	76.3
Bra019148.1-P	Field mustard	cytosol	74.43	74.92
AT4G25630.1	Thale cress	nucleus, plastid	77.35	74.69
Bra013905.1-P	Field mustard	nucleus	73.79	73.55
Bra010455.1-P	Field mustard	cytosol	68.93	73.2
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	67.96	72.16
PGSC0003DMT400053912	Potato	cytosol	58.58	68.56
PGSC0003DMT400010997	Potato	cytosol	32.04	66.0
TraesCS6D01G118100.1	Wheat	extracellular	25.24	65.55
AT5G52490.1	Thale cress	cytosol	56.31	59.59
PGSC0003DMT400077477	Potato	extracellular, golgi	33.98	58.33
Bra028311.1-P	Field mustard	cytosol	31.07	50.79
CDY27815	Canola	cytosol, nucleus, plastid	7.12	43.14
Zm00001d051885_P001	Maize	plasma membrane, plastid	77.99	38.75

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	InterPro:Fibrillarin	InterPro:Fibrillarin_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	HAMAP:MF_00351
PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335	PANTHER:PTHR10335:SF6
InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS6D01G384500	EnsemblPlants:TraesCS6D01G384500.1	SEG:seg

Description

No Description!

Coordinates

chr6D:+:462701175..462704955

Molecular Weight (calculated)

32444.9 Da

IEP (calculated)

10.710

GRAVY (calculated)

-0.352

Length

309 amino acids

Sequence
(BLAST)

001: MRAPMRGGGG RGGGRGFGDS GGRGGRGRGF GGRSDGGGRS GGRGFGGRSA GRGGRGGGRG GGRGGPGMKG GAKVVVVPHK HDGVFIAKAK EDALCTKNMV
101: AGESVYGEKR VSVQNEDGSK VEYRVWNPFR SKLAAAVLGG VDNIWIAPGT RVLYLGAASG TTVSHVSDIV GPTGLVYAVE FSHRSGRDLV NMAKKRTNVI
201: PIIEDARHPA KYRMLVGMVD VIFSDVAQPD QARILALNAS YFLKNGGHFV ISIKANCIDS TQAAEAVFAS EVEKLKADQF KPSEQVTLEP FERDHACVVG
301: GYRMPKKQK

Best Arabidopsis Sequence Match ( AT5G52470.1 )
(BLAST)

001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS

Arabidopsis Description

MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.