Factsheet for TraesCS7D01G467000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G196000.2
TraesCS5B01G187400.1
TraesCS5D01G195000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	TraesCS5A01G196000.2	AT2G19670.1	17666011
AT4G25630.1	TraesCS5B01G187400.1	AT2G19670.1	17666011
AT4G25630.1	TraesCS5D01G195000.1	AT2G19670.1	17666011
AT4G25630.1	TraesCS5A01G196000.2	AT4G29510.1	17666011
AT4G25630.1	TraesCS5B01G187400.1	AT4G29510.1	17666011
AT4G25630.1	TraesCS5D01G195000.1	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G479900.1	Wheat	cytosol	84.43	100.0
TraesCS7B01G382200.1	Wheat	nucleus	93.77	94.43
Os02t0821800-02	Rice	nucleus	79.58	93.88
GSMUA_Achr7P04500_001	Banana	cytosol	76.47	89.47
GSMUA_AchrUn_...	Banana	cytosol	28.37	84.54
TraesCS6D01G384500.1	Wheat	nucleus	90.31	84.47
EES06036	Sorghum	nucleus	88.58	83.39
Os05t0176000-01	Rice	nucleus	88.93	83.17
HORVU7Hr1G108780.2	Barley	nucleus	91.0	81.42
AT5G52470.1	Thale cress	nucleus	82.7	77.6
KRH63857	Soybean	nucleus	80.97	76.47
Solyc03g025270.2.1	Tomato	nucleus	82.7	76.11
VIT_16s0050g00880.t01	Wine grape	nucleus	83.05	75.95
KRH54109	Soybean	endoplasmic reticulum	79.93	75.74
Bra019148.1-P	Field mustard	cytosol	79.58	74.92
PGSC0003DMT400026234	Potato	nucleus	80.97	74.52
AT4G25630.1	Thale cress	nucleus, plastid	82.01	74.06
KRG97622	Soybean	nucleus	79.93	73.8
KRH31252	Soybean	nucleus	79.58	73.02
Bra013905.1-P	Field mustard	nucleus	76.82	71.61
Bra010455.1-P	Field mustard	cytosol	70.93	70.45
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	69.9	69.42
PGSC0003DMT400010997	Potato	cytosol	34.95	67.33
PGSC0003DMT400053912	Potato	cytosol	59.52	65.15
TraesCS6D01G118100.1	Wheat	extracellular	25.95	63.03
AT5G52490.1	Thale cress	cytosol	59.52	58.9
PGSC0003DMT400077477	Potato	extracellular, golgi	36.68	58.89
Bra028311.1-P	Field mustard	cytosol	33.22	50.79
CDY27815	Canola	cytosol, nucleus, plastid	7.27	41.18
Zm00001d051885_P001	Maize	plasma membrane, plastid	83.05	38.59

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	InterPro:Fibrillarin	InterPro:Fibrillarin_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740	HAMAP:MF_00351
PFAM:PF01269	PIRSF:PIRSF006540	PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335	PANTHER:PTHR10335:SF4
InterPro:SAM-dependent_MTases	SMART:SM01206	SUPFAM:SSF53335	EnsemblPlantsGene:TraesCS7D01G467000	EnsemblPlants:TraesCS7D01G467000.1	SEG:seg

Description

No Description!

Coordinates

chr7D:-:580552330..580555764

Molecular Weight (calculated)

30807.2 Da

IEP (calculated)

10.578

GRAVY (calculated)

-0.321

Length

289 amino acids

Sequence
(BLAST)

001: MRPPARGGRG GRGFGGRSDG GGRGGRGGRT PRGRGRGGGG RGGPGMKGGS KVVVVPHKHD GVFIAKAKED ALCTKNMVAG ESVYGEKRVS VQNEDGTKVE
101: YRVWNPFRSK LAAAVLGGVD NIWIAPGARV LYLGAASGTT VSHVSDIVGP TGLVYAVEFS HRSGRDLVNM AKKRTNVIPI IEDARHPAKY RMLVGMVDVI
201: FSDVAQPDQA RILALNASYF LKNGGHFVIS IKANCIDSTQ APEAVFAAEV EKLKLEQFKP SEQVTLEPFE RDHACVVGGY RMPKKPKAT

Best Arabidopsis Sequence Match ( AT4G25630.1 )
(BLAST)

001: MRPPLTGSGG GFSGGRGRGG YSGGRGDGGF SGGRGGGGRG GGRGFSDRGG RGRGRGPPRG GARGGRGPAG RGGMKGGSKV IVEPHRHAGV FIAKGKEDAL
101: VTKNLVPGEA VYNEKRISVQ NEDGTKTEYR VWNPFRSKLA AAILGGVDNI WIKPGAKVLY LGAASGTTVS HVSDLVGPEG CVYAVEFSHR SGRDLVNMAK
201: KRTNVIPIIE DARHPAKYRM LVGMVDVIFS DVAQPDQARI LALNASYFLK SGGHFVISIK ANCIDSTVPA EAVFQTEVKK LQQEQFKPAE QVTLEPFERD
301: HACVVGGYRM PKKPKAATAA

Arabidopsis Description

MED36AMediator of RNA polymerase II transcription subunit 36a [Source:UniProtKB/Swiss-Prot;Acc:Q94AH9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.