Factsheet for HORVU7Hr1G108780.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G056790.7

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25630.1	HORVU5Hr1G056790.7	AT2G19670.1	17666011
AT4G25630.1	HORVU5Hr1G056790.7	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G479900.1	Wheat	cytosol	73.99	97.95
Os02t0821800-02	Rice	nucleus	70.28	92.65
TraesCS7B01G382200.1	Wheat	nucleus	81.73	91.99
TraesCS7D01G467000.1	Wheat	nucleus	81.42	91.0
HORVU6Hr1G091860.1	Barley	plasma membrane	80.5	84.69
EES06036	Sorghum	nucleus	80.5	84.69
Os05t0176000-01	Rice	nucleus	79.57	83.17
AT5G52470.1	Thale cress	nucleus	75.23	78.9
KRH54109	Soybean	endoplasmic reticulum	73.99	78.36
VIT_16s0050g00880.t01	Wine grape	nucleus	76.47	78.16
KRH63857	Soybean	nucleus	73.68	77.78
Solyc03g025270.2.1	Tomato	nucleus	75.54	77.71
HORVU5Hr1G060300.1	Barley	cytosol, golgi, mitochondrion, nucleus	9.6	77.5
PGSC0003DMT400026234	Potato	nucleus	74.3	76.43
KRG97622	Soybean	nucleus	73.37	75.72
KRH31252	Soybean	nucleus	73.68	75.56
Bra019148.1-P	Field mustard	cytosol	70.59	74.27
AT4G25630.1	Thale cress	nucleus, plastid	72.76	73.44
Bra013905.1-P	Field mustard	nucleus	70.28	73.23
Bra010455.1-P	Field mustard	cytosol	65.33	72.51
Bra022595.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.47	70.45
PGSC0003DMT400053912	Potato	cytosol	55.11	67.42
PGSC0003DMT400010997	Potato	cytosol	30.65	66.0
AT5G52490.1	Thale cress	cytosol	53.25	58.9
PGSC0003DMT400077477	Potato	extracellular, golgi	32.82	58.89
Bra028311.1-P	Field mustard	cytosol	29.41	50.26
Zm00001d051885_P001	Maize	plasma membrane, plastid	74.3	38.59

Protein Annotations

MapMan:17.1.1.2.1.5.1	Gene3D:3.30.200.20	Gene3D:3.40.50.150	UniProt:A0A287XRJ1	InterPro:Fibrillarin	InterPro:Fibrillarin_CS
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	EnsemblPlantsGene:HORVU7Hr1G108780	EnsemblPlants:HORVU7Hr1G108780.2	HAMAP:MF_00351	PFAM:PF01269	PIRSF:PIRSF006540
PRINTS:PR00052	ScanProsite:PS00566	PANTHER:PTHR10335	PANTHER:PTHR10335:SF4	InterPro:SAM-dependent_MTases	SMART:SM01206
SUPFAM:SSF53335	UniParc:UPI000B461404	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:626291774..626294967

Molecular Weight (calculated)

34414.4 Da

IEP (calculated)

10.905

GRAVY (calculated)

-0.412

Length

323 amino acids

Sequence
(BLAST)

001: LPSSSLHLRR RQQQISDAMR PPARGGRGGR GFGGRSDGGG RGGRGFSGRS DGGGRGGRGG RGGRTPRGRG RGGGRGAPGM KGGSKVVVIP HKHDGVFIAK
101: AKEDALCTKN MAAGESVYGE KRVSVQNEDG TKAEYRVWNP FRSKLAAAVL GGVDNIWIAP GARVLYLGAA SGTTVSHVSD IVGPTGLVYA VEFSHRSGRD
201: LVNMAKKRTN VIPIIEDARH PAKYRMLVGM VDVIFSDVAQ PDQARILALN ASYFLKNGGH FVISIKANCI DSIQAPEAVF AAEVEKLKLE QFKPSEQVTL
301: EPFERDHACV VGGYRMPKKQ KAT

Best Arabidopsis Sequence Match ( AT5G52470.1 )
(BLAST)

001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS

Arabidopsis Description

MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.