Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G196000.2 | |
| TraesCS5B01G187400.1 | |
| TraesCS5D01G195000.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G195300.1 | Wheat | extracellular | 17.82 | 49.58 |
| TraesCS6D01G118100.1 | Wheat | extracellular | 17.82 | 49.58 |
| Zm00001d013457_P001 | Maize | cytosol | 4.83 | 40.0 |
| PGSC0003DMT400010997 | Potato | cytosol | 15.11 | 33.33 |
| PGSC0003DMT400077477 | Potato | extracellular, golgi | 15.71 | 28.89 |
| GSMUA_Achr7P04500_001 | Banana | cytosol | 21.15 | 28.34 |
| PGSC0003DMT400053912 | Potato | cytosol | 20.85 | 26.14 |
| TraesCS7B01G382200.1 | Wheat | nucleus | 22.66 | 26.13 |
| Bra010455.1-P | Field mustard | cytosol | 22.36 | 25.43 |
| KRG97622 | Soybean | nucleus | 23.57 | 24.92 |
| PGSC0003DMT400026234 | Potato | nucleus | 23.57 | 24.84 |
| Bra019148.1-P | Field mustard | cytosol | 22.96 | 24.76 |
| TraesCS6B01G440500.1 | Wheat | nucleus | 22.96 | 24.68 |
| KRH54109 | Soybean | endoplasmic reticulum | 22.36 | 24.26 |
| Solyc03g025270.2.1 | Tomato | nucleus | 22.66 | 23.89 |
| Bra013905.1-P | Field mustard | nucleus | 22.36 | 23.87 |
| KRH63857 | Soybean | nucleus | 22.05 | 23.86 |
| AT5G52470.1 | Thale cress | nucleus | 22.05 | 23.7 |
| KRH31252 | Soybean | nucleus | 22.36 | 23.49 |
| AT4G25630.1 | Thale cress | nucleus, plastid | 22.05 | 22.81 |
| VIT_16s0050g00880.t01 | Wine grape | nucleus | 21.75 | 22.78 |
| Bra022595.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 19.94 | 22.68 |
| AT5G52490.1 | Thale cress | cytosol | 17.22 | 19.52 |
| Bra028311.1-P | Field mustard | cytosol | 10.88 | 19.05 |
| Zm00001d036744_P001 | Maize | nucleus, plastid | 10.27 | 14.59 |
| Zm00001d037391_P001 | Maize | cytosol | 10.27 | 13.77 |
| Zm00001d001875_P001 | Maize | nucleus | 4.83 | 10.67 |
| Zm00001d023745_P001 | Maize | nucleus | 4.83 | 10.67 |
| Zm00001d044114_P001 | Maize | nucleus | 4.83 | 10.67 |
| TraesCS4B01G122500.1 | Wheat | cytosol | 3.02 | 7.69 |
| CDY27815 | Canola | cytosol, nucleus, plastid | 0.91 | 5.88 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.150 | MapMan:35.1 | InterPro:Fibrillarin | InterPro:Fibrillarin_CS | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009987 | GO:GO:0016740 | PFAM:PF01269 | PRINTS:PR00052 |
| ScanProsite:PS00566 | PANTHER:PTHR10335 | PANTHER:PTHR10335:SF6 | InterPro:SAM-dependent_MTases | SMART:SM01206 | SUPFAM:SSF53335 |
| EnsemblPlantsGene:TraesCS2B01G578600 | EnsemblPlants:TraesCS2B01G578600.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2B:-:766616745..766619209
Molecular Weight (calculated)
35463.6 Da
IEP (calculated)
12.058
GRAVY (calculated)
-0.340
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSSQPPAVS DSADAAASAR APPPAPPLLP DRAATSLPIP ARYHPLLLFC PRTHSLGSCC SSRLRRGRRA RGVAWWPARG APSREPRPPG PRPRLLRPRW
101: AGSTTSTSRA SASSAPCPPP SPPSTCCRTS ASRPTRSPAR SPPSAAWRPS ATPTSTTTPS PPSPRTSSTA STASRRSAST TTRSCQSISV VLLLPLPRPL
201: LPLYSSSTSV VLPFHITSQV VVCRHCTSIS SPCMVKVTRP WREKLLPIAI DIVKDGNISG HLCMREAPRT RVVYLRAAFG TTMSHVSDIV GPTGLVYAVE
301: FSHRSGRDLV NMAKKRTNVI PITEDARHPT K
101: AGSTTSTSRA SASSAPCPPP SPPSTCCRTS ASRPTRSPAR SPPSAAWRPS ATPTSTTTPS PPSPRTSSTA STASRRSAST TTRSCQSISV VLLLPLPRPL
201: LPLYSSSTSV VLPFHITSQV VVCRHCTSIS SPCMVKVTRP WREKLLPIAI DIVKDGNISG HLCMREAPRT RVVYLRAAFG TTMSHVSDIV GPTGLVYAVE
301: FSHRSGRDLV NMAKKRTNVI PITEDARHPT K
001: MRPPVTGGRG GGGFRGGRDG GGRGFGGGRS FGGGRSGDRG RSGPRGRGRG APRGRGGPPR GGMKGGSKVI VEPHRHAGVF IAKGKEDALV TKNLVPGEAV
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS
101: YNEKRISVQN EDGTKVEYRV WNPFRSKLAA AILGGVDNIW IKPGAKVLYL GAASGTTVSH VSDLVGPEGC VYAVEFSHRS GRDLVNMAKK RTNVIPIIED
201: ARHPAKYRML VGMVDVIFSD VAQPDQARIL ALNASFFLKT GGHFVISIKA NCIDSTVAAE AVFQSEVKKL QQEQFKPAEQ VTLEPFERDH ACVVGGYRMP
301: KKQKTPAS
Arabidopsis Description
MED36BProbable mediator of RNA polymerase II transcription subunit 36b [Source:UniProtKB/Swiss-Prot;Acc:Q9FEF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.