CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH49040
KRH74166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29510.1	KRH49040	AT4G29510.1	17666011
AT4G29510.1	KRH74166	AT4G29510.1	17666011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74166	Soybean	nucleus	96.57	97.34
VIT_11s0016g02530.t01	Wine grape	cytosol	78.63	85.14
Zm00001d020188_P001	Maize	extracellular	68.6	84.97
GSMUA_Achr6P22570_001	Banana	cytosol	80.74	78.87
Solyc07g032240.2.1	Tomato	cytosol	77.31	78.13
CDX82711	Canola	cytosol	74.41	78.12
Bra039010.1-P	Field mustard	cytosol	74.67	77.96
CDY35877	Canola	cytosol	74.41	77.69
AT2G19670.1	Thale cress	cytosol	74.14	76.78
TraesCS5B01G187400.1	Wheat	cytosol	76.52	76.32
TraesCS5A01G196000.2	Wheat	cytosol	76.52	76.32
EER98789	Sorghum	cytosol	77.31	76.3
Os09t0359800-01	Rice	cytosol	77.84	76.23
TraesCS5D01G195000.1	Wheat	cytosol	76.25	76.05
HORVU5Hr1G056790.7	Barley	cytosol	76.78	75.98
AT4G29510.1	Thale cress	cytosol	77.84	75.64
Bra011118.1-P	Field mustard	cytosol	77.84	75.64
CDY43510	Canola	cytosol	77.84	75.64
CDY06802	Canola	cytosol	77.57	75.58
Solyc12g008760.1.1	Tomato	cytosol	78.36	75.0
PGSC0003DMT400000915	Potato	cytosol	78.36	75.0
Bra024143.1-P	Field mustard	cytosol	76.78	74.81
CDY14208	Canola	cytosol	64.64	74.47
CDY47762	Canola	cytosol	75.99	74.23
CDY03574	Canola	cytosol	56.2	74.22
PGSC0003DMT400021726	Potato	cytosol	77.84	73.93
CDY30213	Canola	cytosol	75.73	73.4
Bra010325.1-P	Field mustard	cytosol	32.45	71.51
KRH17553	Soybean	cytosol	9.76	43.02
KRH40914	Soybean	cytosol, plastid	26.12	38.37
KRG89089	Soybean	nucleus	37.2	34.73
KRH11256	Soybean	endoplasmic reticulum	28.23	34.63
KRG90589	Soybean	cytosol, plastid	34.04	31.54
KRH54868	Soybean	cytosol	30.34	30.75
KRH63019	Soybean	cytosol	29.55	29.95
KRH02253	Soybean	cytosol	30.87	21.87
KRH37109	Soybean	cytosol	30.87	21.79
KRH12054	Soybean	cytosol	31.13	21.69
KRH30091	Soybean	nucleus	35.62	21.67
KRH50844	Soybean	cytosol	30.61	21.64
KRH62812	Soybean	cytosol	34.83	20.95

Protein Annotations

EntrezGene:100781777	MapMan:12.3.4.1	Gene3D:2.70.160.11	Gene3D:3.40.50.150	EMBL:ACUP02004330	InterPro:Arg_MeTrfase
EnsemblPlantsGene:GLYMA_07G128100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0006479
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008469	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	GO:GO:0019919	GO:GO:0032259	GO:GO:0034969
GO:GO:0035242	UniProt:I1KJU3	InterPro:IPR025799	EnsemblPlants:KRH49040	ProteinID:KRH49040	ProteinID:KRH49040.1
PFAM:PF13649	PFscan:PS51678	PANTHER:PTHR11006	PANTHER:PTHR11006:SF53	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
UniParc:UPI0002338C09	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:15329685..15332830

Molecular Weight (calculated)

42897.0 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.318

Length

379 amino acids

Sequence
(BLAST)

001: MGRRKNNSNN NQCSSSKEDA DMNSNHLRFE EADEAVDESS NLDQSMCDIE ESDDKTSADY YFDSYSHFGI HEEMLKDSVR TKTYQNVIYQ NKFLFKNKVV
101: LDVGAGTGIL SLFCAKAGAE HVYAVECSHM ADMAKEIVEA NGYSNVVTVL KGKIEEIELP VAKVDIIISE WMGYFLLFEN MLNSVLYARD KWLVDGGVVL
201: PDKASLHLTA IEDADYKEDK IEFWNNVYGF DMSCIKKQAI MEPLVDTVDQ NQIATNCQLL KTMDISKMAP GDASFAAPFK LVAERDDYIH ALVAYFDVSF
301: TKCHKLMGFS TGPRSRATHW KQTVLYLEDV LTVCEGEAIV GSMTVAPNKK NPRDVDIMLK YSLNGRRCNV SRVQYYKMR

Best Arabidopsis Sequence Match ( AT4G29510.1 )
(BLAST)

001: MTKNSNHDEN EFISFEPNQN TKIRFEDADE DEVAEGSGVA GEETPQDESM FDAGESADTA EVTDDTTSAD YYFDSYSHFG IHEEMLKDVV RTKTYQNVIY
101: QNKFLIKDKI VLDVGAGTGI LSLFCAKAGA AHVYAVECSQ MADMAKEIVK ANGFSDVITV LKGKIEEIEL PTPKVDVIIS EWMGYFLLFE NMLDSVLYAR
201: DKWLVEGGVV LPDKASLHLT AIEDSEYKED KIEFWNSVYG FDMSCIKKKA MMEPLVDTVD QNQIVTDSRL LKTMDISKMS SGDASFTAPF KLVAQRNDYI
301: HALVAYFDVS FTMCHKLLGF STGPKSRATH WKQTVLYLED VLTICEGETI TGTMSVSPNK KNPRDIDIKL SYSLNGQHCK ISRTQHYKMR

Arabidopsis Description

PRMT11Protein arginine N-methyltransferase 1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.