Factsheet for PGSC0003DMT400002103

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000915
PGSC0003DMT400021726
PGSC0003DMT400025445
PGSC0003DMT400029683
PGSC0003DMT400060957
PGSC0003DMT400066217

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	PGSC0003DMT400000915	AT4G29510.1	21798944
AT1G26110.1	PGSC0003DMT400021726	AT4G29510.1	21798944
AT1G26110.1	PGSC0003DMT400066217	AT4G34230.1	21798944
AT1G26110.1	PGSC0003DMT400025445	AT5G06770.1	21798944
AT1G26110.1	PGSC0003DMT400029683	AT5G06770.1	21798944
AT1G26110.1	PGSC0003DMT400060957	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009980.2.1	Tomato	nucleus	93.48	93.32
KRG93865	Soybean	cytosol	5.85	67.31
Zm00001d051566_P001	Maize	nucleus	9.2	61.11
VIT_01s0011g02820.t01	Wine grape	nucleus	62.54	60.71
KRH70633	Soybean	nucleus	60.37	58.6
KRH75529	Soybean	nucleus	59.87	58.59
KRH70630	Soybean	nucleus	60.2	58.06
KRH62823	Soybean	nucleus	59.2	57.1
CDY51127	Canola	nucleus	54.18	55.38
Bra011009.1-P	Field mustard	nucleus	54.85	54.94
GSMUA_Achr1P20740_001	Banana	nucleus	54.01	54.84
AT1G26110.1	Thale cress	nucleus	56.02	54.83
CDY36091	Canola	nucleus	54.68	54.77
CDY55955	Canola	nucleus	54.35	54.53
CDY20530	Canola	nucleus	54.18	53.82
GSMUA_Achr2P07060_001	Banana	nucleus	52.51	52.95
GSMUA_Achr9P00760_001	Banana	nucleus	49.5	49.25
Os01t0111200-01	Rice	nucleus	45.65	44.03
TraesCS3A01G006100.1	Wheat	nucleus	46.15	41.63
HORVU3Hr1G000880.1	Barley	nucleus	45.82	41.52
EES02617	Sorghum	nucleus, plastid	45.65	41.24
Zm00001d008439_P001	Maize	plasma membrane	44.48	40.99
Zm00001d040142_P001	Maize	nucleus, plastid	43.98	40.65
TraesCS3D01G004500.1	Wheat	plastid	44.98	40.51
Zm00001d027310_P001	Maize	nucleus, plastid	17.56	33.65
PGSC0003DMT400010431	Potato	nucleus	35.28	30.58

Protein Annotations

EntrezGene:102579708	MapMan:16.8.2.2.3	Gene3D:2.30.30.100	InterPro:DFDF	InterPro:FDF_dom	InterPro:FFD_box
GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0010606	GO:GO:0016043	GO:GO:0017148	GO:GO:0019538	GO:GO:0031087
GO:GO:0033962	GO:GO:0042803	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768	InterPro:LSM_dom_sf
InterPro:Lsm14-like_N	UniProt:M0ZJL8	PFAM:PF09532	PFAM:PF12701	EnsemblPlantsGene:PGSC0003DMG400000802	PGSC:PGSC0003DMG400000802
EnsemblPlants:PGSC0003DMT400002103	PFscan:PS51512	PFscan:PS51513	PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10
SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182	InterPro:TFG_box	UniParc:UPI000296BB20	RefSeq:XP_006362520.1
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000802]

Coordinates

chr5:+:1829233..1835886

Molecular Weight (calculated)

63309.7 Da

IEP (calculated)

7.811

GRAVY (calculated)

-0.626

Length

598 amino acids

Sequence
(BLAST)

001: MAAESSSARS SGSSADSYIG SLISLTSKSE IRYEGILYNI NTDESSIGLR NVRSFGTEGR KKDGPQVPPS DKTYEYILFR GSDIKDLQVK SSPPLQPTPP
101: INNDPAIIQS HYPRPPTTSA SLPAAVGGSL TDLSSHSAQP GHPGSTFQSG LPLYQPGGNM GSWGPSPPPP NAGAGGLAMP MYWQGFYGAP NGLPQMQQQS
201: LLRPPPGLAM PPSMPQMQFS GFNSSLPTGG SSLQAPNFPE YPSSLMPTTT SLTSSSLPAA TLPSTVPSLQ PVVPVTETIS SAISKKASVS AMPTSTLSAS
301: LPTLPPLSTS PDVNPVVLPV SNKPNPVPSP ALSQSVSTIV ETPTPSLITP GQLLQSGPID VPSTQSMQTS QRDVEVVQVL PAPSSEPPAP AKTEAQPPIL
401: PLPSQTRVQK TNGAPYQPRY VNYRGRGGRG MGVSRPVTKF EEDFDFMAMN EKFKKDEVWG HLGKSNREGD GNDSDEDISY NEYEDDLPKI DVQPVYNKDD
501: FFDSLSSNAL DHDSNHGRTR FSEQRKIDVE TFGDFSRYRG GRGGRGPGRG GRSRGSYYGR GGGGYGYGYG NGNGNGNGYG YGYGGGRGRG RGVPSRTL

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.