Factsheet for Os01t0111200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0187800-01
Os02t0194200-01
Os04t0665700-01
Os06t0618100-01
Os09t0359800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	Os09t0359800-01	AT4G29510.1	21798944
AT1G26110.1	Os02t0187800-01	AT4G34230.1	21798944
AT1G26110.1	Os02t0194200-01	AT5G06770.1	21798944
AT1G26110.1	Os04t0665700-01	AT5G06770.1	21798944
AT1G26110.1	Os06t0618100-01	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051566_P001	Maize	nucleus	11.13	76.67
KRG93865	Soybean	cytosol	5.97	71.15
Zm00001d008439_P001	Maize	plasma membrane	73.71	70.42
EES02617	Sorghum	nucleus, plastid	74.84	70.09
Zm00001d040142_P001	Maize	nucleus, plastid	72.26	69.24
HORVU3Hr1G000880.1	Barley	nucleus	73.06	68.64
VIT_02s0087g00680.t01	Wine grape	cytosol	9.19	67.86
TraesCS3A01G006100.1	Wheat	nucleus	66.94	62.59
TraesCS3D01G004500.1	Wheat	plastid	66.94	62.5
GSMUA_Achr1P20740_001	Banana	nucleus	52.1	54.84
GSMUA_Achr2P07060_001	Banana	nucleus	51.29	53.63
GSMUA_Achr9P00760_001	Banana	nucleus	48.87	50.42
VIT_01s0011g02820.t01	Wine grape	nucleus	49.35	49.68
Solyc08g075300.2.1	Tomato	nucleus, plastid	24.52	47.95
Zm00001d027310_P001	Maize	nucleus, plastid	24.03	47.76
KRH70633	Soybean	nucleus	46.94	47.24
KRH75529	Soybean	nucleus	46.13	46.81
KRH70630	Soybean	nucleus	46.61	46.61
KRH62823	Soybean	nucleus	45.97	45.97
PGSC0003DMT400002103	Potato	nucleus	44.03	45.65
AT1G26110.1	Thale cress	nucleus	44.84	45.5
CDY36091	Canola	nucleus	43.23	44.89
Bra011009.1-P	Field mustard	nucleus	43.06	44.72
Solyc05g009980.2.1	Tomato	nucleus	43.06	44.57
CDY20530	Canola	nucleus	43.23	44.52
CDY55955	Canola	nucleus	42.42	44.13
CDY51127	Canola	nucleus	41.61	44.1
Os06t0496000-01	Rice	plasma membrane	44.03	39.57
KRH76455	Soybean	nucleus	30.0	32.98
CDY70855	Canola	plastid	12.74	31.73
Solyc03g119850.1.1	Tomato	mitochondrion	21.61	30.88
Bra027601.1-P	Field mustard	nucleus, plastid	27.58	30.87
CDX87795	Canola	nucleus	25.0	30.16
CDY68331	Canola	nucleus, plastid	25.32	30.02
AT5G45330.1	Thale cress	nucleus, plastid	27.26	29.6
VIT_02s0087g00650.t01	Wine grape	cytosol	24.35	29.49
Bra021964.1-P	Field mustard	nucleus, plastid	25.0	29.03
KRH39773	Soybean	endoplasmic reticulum	27.1	28.52
PGSC0003DMT400010431	Potato	nucleus	30.48	27.39
Solyc06g069280.2.1	Tomato	nucleus	30.0	26.76
CDY13062	Canola	nucleus, plastid	17.58	26.08

Protein Annotations

MapMan:16.8.2.2.3	Gene3D:2.30.30.100	EntrezGene:4326141	ProteinID:BAD44943.1	ProteinID:BAF03716.1	ProteinID:BAS70017.1
InterPro:DFDF	InterPro:FDF_dom	InterPro:FFD_box	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768
InterPro:LSM_dom_sf	InterPro:Lsm14-like_N	EnsemblPlantsGene:Os01g0111200	EnsemblPlants:Os01t0111200-01	PFAM:PF09532	PFAM:PF12701
PFscan:PS51512	PFscan:PS51513	PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	UniProt:Q657T0
SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182	InterPro:TFG_box	UniParc:UPI000043A12C	RefSeq:XP_015621201.1
SEG:seg	:	:	:	:	:

Description

Like-Sm ribonucleoprotein (LSM)-related domain domain containing protein. (Os01t0111200-01)

Coordinates

chr1:+:588917..593714

Molecular Weight (calculated)

65309.9 Da

IEP (calculated)

7.189

GRAVY (calculated)

-0.588

Length

620 amino acids

Sequence
(BLAST)

001: MAAEAPPSSS TSSSAGPPAA AGSSGGGAAA SPDSYIGSLI SLTSKSEIRY EGILYNINTE ESSIGLRNVR SFGTEGRKKD GVQIPASTKV YEYILFRGSD
101: IKDLQVKSSP PPPPPPQPAA PHNDPAIIQS HYSQPASASS SLPSAGSAVL PDLSSQAAQY GLQRPSFQSN IPLYQPGSVP WGSSAPPSAG NASGLSVPPM
201: YWQGYYPPGG LPPHLQQPPL LQPGLSVPQG LQYAGLNPTL SSGPQKLSEL QPPLLQPPGT TQGPSSGILP TTTAPSSANL LSPETSKPLL PNMGPLFTPP
301: VPSVGATLPL ASLPTSIAES SAMAPHNFSS LVSNKTADIP GSTLAYQSVS QAVSSTVASS SSAHMDMPVP LLASSGQLLQ NAPSMLSSSQ SMQTPLQMSS
401: KDFKAVESKT RVVEPLLPDP PSRALPENNE PILPLPKQTP QKYNGAGSHS NHHYRGRGRG RGSAFSQSVT NFTEEFDFMA MNEKFNKDEV WGHLGKKSHS
501: RDKDGELGDD VFDEDLEDEE TENPELAAKP VYVKDDFFDS LTSGTFGRGG QNGRSRFSEQ RKLDTETFGD FPRHRQPYRG GGRGYRGGGR ARGSYYGGRG
601: YGSMGARGGQ GNSYPHRGSY

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.