Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU76369 | Sorghum | nucleus | 60.29 | 64.7 |
| Zm00001d037446_P005 | Maize | nucleus | 59.86 | 59.77 |
| Os01t0111200-01 | Rice | nucleus | 39.57 | 44.03 |
Protein Annotations
| Gene3D:2.30.30.100 | MapMan:35.1 | ProteinID:BAD46512.1 | ProteinID:BAF19607.1 | ProteinID:BAS97894.1 | InterPro:DFDF |
| InterPro:FDF_dom | InterPro:FFD_box | InterPro:IPR025761 | InterPro:IPR025762 | InterPro:IPR025768 | InterPro:LSM_dom_sf |
| InterPro:Lsm14-like_N | EnsemblPlantsGene:Os06g0496000 | EnsemblPlants:Os06t0496000-01 | PFAM:PF09532 | PFAM:PF12701 | PFscan:PS51512 |
| PFscan:PS51513 | PFscan:PS51536 | PANTHER:PTHR13586 | PANTHER:PTHR13586:SF11 | UniProt:Q651K5 | SMART:SM01199 |
| SMART:SM01271 | SUPFAM:SSF50182 | InterPro:TFG_box | UniParc:UPI000043A59C | SEG:seg | : |
Description
Like-Sm ribonucleoprotein (LSM)-related domain domain containing protein. (Os06t0496000-01)
Coordinates
chr6:+:17311252..17318590
Molecular Weight (calculated)
73164.7 Da
IEP (calculated)
8.185
GRAVY (calculated)
-0.573
Length
690 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAPESY IGSVISLTSK SEIRYEGVLY TINTEESSIG LRNVRSFGTE GRKKDGQQIP ASDKIYEYIL FRGSDIKDLQ VKSSPPAQPT TLHNDPAIIQ
101: SHYPCPASTS LPPPASTAAD PASHNGQSGI QMPPPLPQFQ PGASLPSWNS SPMPSSANGA PASTTTADPG SHNGQSGIQM PPPLPQYQPG ASLPSWNSSP
201: MPSSANGAGL TMPPMYWPGF YTPPSGFPHL QQPPFLRPPH GLTIPQALQQ PIQYPGLNAP LPPFPRMPEF ALPQPGSGNN LTQNLGVSTS MPVPALSSTP
301: ATESSANQLP NMLSSVSASV FSLGLTPPSV NPPVSTIEST MSQSQGISPL MNNKPVSLPL DSTVPSASSN KPMNIPVPTY LPSSQPPLAN IAASAATVAE
401: PVTLVTPGQL LPTISSTVLS ADALETASAM IPSPKAASSM VSSSQAALAA SSQVTSSVVS PSEDQFASSP VPSHQQLEQN NEDRHTKKPE WKAKQHSVAP
501: SNKEPLLPAP KPTLQKPVGA SSYIQYNNRG RGRGRGRGRG IGQSRPITKF TEDFDFMAMN EKFNKDEVWG HLGKSKGQLN DDPNEYEDDV LEDDISPGKP
601: EVKPVYVKDD FFDSLSCNTI DNGGGNGRIK FSEQRKIDTE TFGDSARHRP MGMRGGGRGP RGGPRGRGYY GRGYGYMGRG RGYSYPNHQS
101: SHYPCPASTS LPPPASTAAD PASHNGQSGI QMPPPLPQFQ PGASLPSWNS SPMPSSANGA PASTTTADPG SHNGQSGIQM PPPLPQYQPG ASLPSWNSSP
201: MPSSANGAGL TMPPMYWPGF YTPPSGFPHL QQPPFLRPPH GLTIPQALQQ PIQYPGLNAP LPPFPRMPEF ALPQPGSGNN LTQNLGVSTS MPVPALSSTP
301: ATESSANQLP NMLSSVSASV FSLGLTPPSV NPPVSTIEST MSQSQGISPL MNNKPVSLPL DSTVPSASSN KPMNIPVPTY LPSSQPPLAN IAASAATVAE
401: PVTLVTPGQL LPTISSTVLS ADALETASAM IPSPKAASSM VSSSQAALAA SSQVTSSVVS PSEDQFASSP VPSHQQLEQN NEDRHTKKPE WKAKQHSVAP
501: SNKEPLLPAP KPTLQKPVGA SSYIQYNNRG RGRGRGRGRG IGQSRPITKF TEDFDFMAMN EKFNKDEVWG HLGKSKGQLN DDPNEYEDDV LEDDISPGKP
601: EVKPVYVKDD FFDSLSCNTI DNGGGNGRIK FSEQRKIDTE TFGDSARHRP MGMRGGGRGP RGGPRGRGYY GRGYGYMGRG RGYSYPNHQS
001: MASESSQSSS PSSSQPPSSV PSPSPGNNVG DTFIGSFISL ISKYEIRYEG ILYHLNVQDS TLGLKNVRSC GTEGRKKDGP QIPPCDKVYD YILFRGSDIK
101: DLQVNPSPSA QSRQEIQSEQ DVNQSPHSRP AMTMSSPISG YDSGYGLGRG SQWINTPALS SKPVPVTQHS SVPLSFQPPS ANAGSLTESP VSLIDSTQSN
201: AGSSMPIPSF VQGNKFASSG VPLGMMQKPV SSSSTIPNGP QIIDYFSSPI MGLVDDSSQV VTRSPDVSSN QSYSSNPSPL GQTQLHTPPG LASVSSNLSP
301: PSEAQLSAPN IQKIYPSAPQ AIGKVVYDPQ SNHPHRSIPH ELPAVASNSA PVIPGPLSKS PESFFDMDPS LQSRQQMVYR GQEMFAATNP ASANVPSQSF
401: APRNHAPLLP LPVSAHQSRI PSSSIEYTEE FDFEAMNEKF KKSELWGYLG RNNQRNQNDY GEETAIEPNA EGKPAYNKDD FFDTISCNQL DRVARSGQQH
501: NQFPEHMRQV PEAFGNNFQR PPPLQPGQGA YLAAQTNYRG GYHNNNNNNY YSNSGYGYYS GGRGRGRNTH F
101: DLQVNPSPSA QSRQEIQSEQ DVNQSPHSRP AMTMSSPISG YDSGYGLGRG SQWINTPALS SKPVPVTQHS SVPLSFQPPS ANAGSLTESP VSLIDSTQSN
201: AGSSMPIPSF VQGNKFASSG VPLGMMQKPV SSSSTIPNGP QIIDYFSSPI MGLVDDSSQV VTRSPDVSSN QSYSSNPSPL GQTQLHTPPG LASVSSNLSP
301: PSEAQLSAPN IQKIYPSAPQ AIGKVVYDPQ SNHPHRSIPH ELPAVASNSA PVIPGPLSKS PESFFDMDPS LQSRQQMVYR GQEMFAATNP ASANVPSQSF
401: APRNHAPLLP LPVSAHQSRI PSSSIEYTEE FDFEAMNEKF KKSELWGYLG RNNQRNQNDY GEETAIEPNA EGKPAYNKDD FFDTISCNQL DRVARSGQQH
501: NQFPEHMRQV PEAFGNNFQR PPPLQPGQGA YLAAQTNYRG GYHNNNNNNY YSNSGYGYYS GGRGRGRNTH F
Arabidopsis Description
DCP5-LDecapping 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FH77]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.