Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- peroxisome 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0087g00680.t01 | Wine grape | cytosol | 10.51 | 71.43 |
| Bra021964.1-P | Field mustard | nucleus, plastid | 54.29 | 58.05 |
| CDY70855 | Canola | plastid | 24.87 | 57.03 |
| CDY68331 | Canola | nucleus, plastid | 51.66 | 56.41 |
| CDX87795 | Canola | nucleus | 50.61 | 56.23 |
| Bra027601.1-P | Field mustard | nucleus, plastid | 52.71 | 54.33 |
| Zm00001d051566_P001 | Maize | nucleus | 7.36 | 46.67 |
| Solyc08g075300.2.1 | Tomato | nucleus, plastid | 25.74 | 46.37 |
| KRH76455 | Soybean | nucleus | 33.63 | 34.04 |
| CDY13062 | Canola | nucleus, plastid | 22.07 | 30.14 |
| GSMUA_Achr1P20740_001 | Banana | nucleus | 30.3 | 29.37 |
| GSMUA_Achr2P07060_001 | Banana | nucleus | 30.47 | 29.34 |
| KRH39773 | Soybean | endoplasmic reticulum | 29.25 | 28.35 |
| GSMUA_Achr9P00760_001 | Banana | nucleus | 28.72 | 27.29 |
| Os01t0111200-01 | Rice | nucleus | 29.6 | 27.26 |
| AT1G26110.1 | Thale cress | nucleus | 29.07 | 27.17 |
| TraesCS3A01G006100.1 | Wheat | nucleus | 29.42 | 25.34 |
| Zm00001d008439_P001 | Maize | plasma membrane | 28.55 | 25.12 |
| TraesCS3D01G004500.1 | Wheat | plastid | 29.07 | 25.0 |
| Zm00001d040142_P001 | Maize | nucleus, plastid | 28.2 | 24.88 |
| EES02617 | Sorghum | nucleus, plastid | 28.72 | 24.77 |
| HORVU3Hr1G000880.1 | Barley | nucleus | 28.02 | 24.24 |
| Zm00001d027310_P001 | Maize | nucleus, plastid | 11.56 | 21.15 |
Protein Annotations
| Gene3D:2.30.30.100 | MapMan:35.1 | EntrezGene:834569 | ProteinID:AED95233.1 | ArrayExpress:AT5G45330 | EnsemblPlantsGene:AT5G45330 |
| RefSeq:AT5G45330 | TAIR:AT5G45330 | RefSeq:AT5G45330-TAIR-G | EnsemblPlants:AT5G45330.1 | TAIR:AT5G45330.1 | EMBL:AY735697 |
| EMBL:AY954874 | Unigene:At.50505 | ProteinID:BAB10254.1 | EMBL:BT022113 | Symbol:DCP5-L | InterPro:DFDF |
| InterPro:FDF_dom | InterPro:FFD_box | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0006412 | GO:GO:0006417 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0010606 | GO:GO:0016043 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0031087 |
| GO:GO:0042803 | InterPro:IPR025761 | InterPro:IPR025762 | InterPro:IPR025768 | InterPro:LSM_dom_sf | InterPro:Lsm14-like_N |
| RefSeq:NP_199346.1 | PFAM:PF09532 | PFAM:PF12701 | PO:PO:0000293 | PFscan:PS51512 | PFscan:PS51513 |
| PFscan:PS51536 | PANTHER:PTHR13586 | PANTHER:PTHR13586:SF3 | UniProt:Q9FH77 | SMART:SM01199 | SMART:SM01271 |
| SUPFAM:SSF50182 | InterPro:TFG_box | UniParc:UPI00000AA7E1 | SEG:seg | : | : |
Description
DCP5-LDecapping 5-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FH77]
Coordinates
chr5:-:18363406..18366684
Molecular Weight (calculated)
61802.2 Da
IEP (calculated)
6.577
GRAVY (calculated)
-0.703
Length
571 amino acids
Sequence
(BLAST)
(BLAST)
001: MASESSQSSS PSSSQPPSSV PSPSPGNNVG DTFIGSFISL ISKYEIRYEG ILYHLNVQDS TLGLKNVRSC GTEGRKKDGP QIPPCDKVYD YILFRGSDIK
101: DLQVNPSPSA QSRQEIQSEQ DVNQSPHSRP AMTMSSPISG YDSGYGLGRG SQWINTPALS SKPVPVTQHS SVPLSFQPPS ANAGSLTESP VSLIDSTQSN
201: AGSSMPIPSF VQGNKFASSG VPLGMMQKPV SSSSTIPNGP QIIDYFSSPI MGLVDDSSQV VTRSPDVSSN QSYSSNPSPL GQTQLHTPPG LASVSSNLSP
301: PSEAQLSAPN IQKIYPSAPQ AIGKVVYDPQ SNHPHRSIPH ELPAVASNSA PVIPGPLSKS PESFFDMDPS LQSRQQMVYR GQEMFAATNP ASANVPSQSF
401: APRNHAPLLP LPVSAHQSRI PSSSIEYTEE FDFEAMNEKF KKSELWGYLG RNNQRNQNDY GEETAIEPNA EGKPAYNKDD FFDTISCNQL DRVARSGQQH
501: NQFPEHMRQV PEAFGNNFQR PPPLQPGQGA YLAAQTNYRG GYHNNNNNNY YSNSGYGYYS GGRGRGRNTH F
101: DLQVNPSPSA QSRQEIQSEQ DVNQSPHSRP AMTMSSPISG YDSGYGLGRG SQWINTPALS SKPVPVTQHS SVPLSFQPPS ANAGSLTESP VSLIDSTQSN
201: AGSSMPIPSF VQGNKFASSG VPLGMMQKPV SSSSTIPNGP QIIDYFSSPI MGLVDDSSQV VTRSPDVSSN QSYSSNPSPL GQTQLHTPPG LASVSSNLSP
301: PSEAQLSAPN IQKIYPSAPQ AIGKVVYDPQ SNHPHRSIPH ELPAVASNSA PVIPGPLSKS PESFFDMDPS LQSRQQMVYR GQEMFAATNP ASANVPSQSF
401: APRNHAPLLP LPVSAHQSRI PSSSIEYTEE FDFEAMNEKF KKSELWGYLG RNNQRNQNDY GEETAIEPNA EGKPAYNKDD FFDTISCNQL DRVARSGQQH
501: NQFPEHMRQV PEAFGNNFQR PPPLQPGQGA YLAAQTNYRG GYHNNNNNNY YSNSGYGYYS GGRGRGRNTH F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.