Factsheet for GSMUA_Achr1P20740_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19650_001
GSMUA_Achr4P06150_001
GSMUA_Achr4P12970_001
GSMUA_Achr6P22570_001
GSMUA_Achr7P20530_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26110.1	GSMUA_Achr6P22570_001	AT4G29510.1	21798944
AT1G26110.1	GSMUA_Achr4P06150_001	AT4G34230.1	21798944
AT1G26110.1	GSMUA_Achr4P12970_001	AT4G34230.1	21798944
AT1G26110.1	GSMUA_Achr1P19650_001	AT5G06770.1	21798944
AT1G26110.1	GSMUA_Achr7P20530_001	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P00760_001	Banana	nucleus	75.89	74.38
GSMUA_Achr2P07060_001	Banana	nucleus	74.02	73.52
VIT_02s0087g00680.t01	Wine grape	cytosol	10.02	70.24
KRG93865	Soybean	cytosol	5.94	67.31
Zm00001d051566_P001	Maize	nucleus	9.85	64.44
VIT_01s0011g02820.t01	Wine grape	nucleus	60.27	57.63
PGSC0003DMT400002103	Potato	nucleus	54.84	54.01
KRH70633	Soybean	nucleus	56.37	53.9
KRH70630	Soybean	nucleus	56.71	53.87
KRH75529	Soybean	nucleus	55.86	53.85
KRH62823	Soybean	nucleus	56.03	53.23
Solyc05g009980.2.1	Tomato	nucleus	53.99	53.09
Os01t0111200-01	Rice	nucleus	54.84	52.1
AT1G26110.1	Thale cress	nucleus	50.59	48.77
CDY36091	Canola	nucleus	48.73	48.07
Bra011009.1-P	Field mustard	nucleus	48.56	47.91
CDY55955	Canola	nucleus	48.22	47.65
EES02617	Sorghum	nucleus, plastid	53.14	47.28
CDY51127	Canola	nucleus	46.69	47.01
Zm00001d008439_P001	Maize	plasma membrane	51.78	47.0
TraesCS3A01G006100.1	Wheat	nucleus	52.8	46.91
CDY20530	Canola	nucleus	47.88	46.84
Solyc08g075300.2.1	Tomato	nucleus, plastid	25.13	46.69
TraesCS3D01G004500.1	Wheat	plastid	51.95	46.08
HORVU3Hr1G000880.1	Barley	nucleus	51.61	46.06
Zm00001d040142_P001	Maize	nucleus, plastid	49.58	45.13
Zm00001d027310_P001	Maize	nucleus, plastid	19.86	37.5
KRH76455	Soybean	nucleus	32.09	33.51
CDY70855	Canola	plastid	13.41	31.73
Solyc03g119850.1.1	Tomato	mitochondrion	23.26	31.57
CDX87795	Canola	nucleus	26.66	30.54
CDY68331	Canola	nucleus, plastid	26.99	30.4
AT5G45330.1	Thale cress	nucleus, plastid	29.37	30.3
PGSC0003DMT400010431	Potato	nucleus	35.48	30.29
Bra027601.1-P	Field mustard	nucleus, plastid	27.84	29.6
Bra021964.1-P	Field mustard	nucleus, plastid	26.83	29.59
KRH39773	Soybean	endoplasmic reticulum	29.54	29.54
Solyc06g069280.2.1	Tomato	nucleus	34.8	29.5
VIT_02s0087g00650.t01	Wine grape	cytosol	25.64	29.49
CDY13062	Canola	nucleus, plastid	16.98	23.92

Protein Annotations

MapMan:16.8.2.2.3	Gene3D:2.30.30.100	InterPro:DFDF	InterPro:FDF_dom	InterPro:FFD_box	EnsemblPlantsGene:GSMUA_Achr1G20740_001
EnsemblPlants:GSMUA_Achr1P20740_001	EnsemblPlants:GSMUA_Achr1T20740_001	InterPro:IPR025761	InterPro:IPR025762	InterPro:IPR025768	InterPro:LSM_dom_sf
InterPro:Lsm14-like_N	UniProt:M0S1N2	PFAM:PF09532	PFAM:PF12701	PFscan:PS51512	PFscan:PS51513
PFscan:PS51536	PANTHER:PTHR13586	PANTHER:PTHR13586:SF10	SMART:SM01199	SMART:SM01271	SUPFAM:SSF50182
InterPro:TFG_box	UniParc:UPI000294D449	SEG:seg	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G20740_001]

Coordinates

chr1:+:15620849..15630489

Molecular Weight (calculated)

62888.9 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.536

Length

589 amino acids

Sequence
(BLAST)

001: MAAETARSGA SADSYIGSLI SLTSKSEIRY EGILYSINTE ESSIGLSNVR SFGTEGRKKD GPQIPASDKI YEYILFRGSD IKDLQVKSSP PAQPTPVNND
101: PAIIQTHYPR PASTSTSMPL VGSGSVADLS SHTAQLGLPR STFQGSLPLY QPGGGLGTWG SSPTPPTANG SGLAMPPMYW QGYYAPSGGL PHLQQPSLLR
201: PPPGLPMPHS MQHPFQYPAM NPSLPSGSQT LPELPLFPHA SSNTTLTSSP LPSVLDPSST STLSVETSST LLPNKSPATT TPVLTFNVSL PLVPPLTSNL
301: EKTAAMPHST PVVSSKPGAV PGSTLAYLSV SEPVPSSVVS SSSSQVEKPV ALVMPGKLLQ TGPSVLPSSQ PLQTSRMDAD GKALEDKSKP LLPEPSLAAA
401: TEAKEPILPL PKSTIQKLNG ATSHNYYSRG RGRGRGNEYS RPATKFTEDF DFMAMNEKFN KDEVWGHLGK NKAHVKDKDG ELQEDETDDY LDEDDEALKL
501: EIKPVYVKDD FFDSLSCATL DRGTRGGRTR FSEQLKIDTE TFGDFARHRA SRGGGRGLRG GGRGRGSYYG RGYGYIGRGR GYGHPHRAS

Best Arabidopsis Sequence Match ( AT1G26110.1 )
(BLAST)

001: MAADNTGSKS SSAADSYVGS LISLTSKSEI RYEGILYNIN TDESSIGLQN VRSFGTEGRK KDGPQVPPSD KVYEYILFRG TDIKDLQVKA SPPVQPPAST
101: INNDPAIIQS HYPSPMPTSG SLPSTASGSL PDISSHNGQP GQHGMGFQNA MPLYQPGGNL GSWGASPQPP MYWQGFYTPP PNGLPQLHQQ SLIRPPHGLP
201: MPNSLQQPLQ YPNFNTPPPP TGSSSLQGSS LPEAPSSLFP FSTSSQMLAP SSLPFPGLPP VTLSSSLQST LQSAPSPSLA SEMAPPLLSN KAPITAPPTL
301: PQDTNLLSFS LSTTRATEAS TGLPLSNKPS VVTGPISPPQ TTPLTSAPVA GVSSSISQDK PKPLLVTPGQ LLQSGSSAVS LSPPSTNADK DVEVVQVSSS
401: AGLEQSVPVT SEAQPPILPL PSSARPTQKP NGHSFPNHNG YRGRGRGRGR GAGRSHQVMK FTEDFDFTAM NEKFNKDEVW GHLGKSTTLD GDEDDDSPTV
501: DEAELPKIEA KPVYNKDDFF DSLSSNTIDR ESQNSRPRFS EQRKLDTETF GEFSRFRGGR GGRGGYGRNN GYSRGGYGGR GYGGYGGRGG GGGGYGYGGR
601: GQGRGVSNRT T

Arabidopsis Description

DCP5Protein decapping 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9C658]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.