Factsheet for GSMUA_Achr1P19650_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P12550_001
GSMUA_Achr4P22370_001
GSMUA_Achr4P28550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	GSMUA_Achr2P12550_001	AT5G04280.1	21798944
AT5G06770.1	GSMUA_Achr4P22370_001	AT5G04280.1	21798944
AT5G06770.1	GSMUA_Achr4P28550_001	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g01290.t01	Wine grape	cytosol	65.13	65.78
GSMUA_Achr7P20530_001	Banana	nucleus	64.14	65.22
Os02t0194200-01	Rice	nucleus	63.82	64.67
VIT_13s0156g00320.t01	Wine grape	cytosol	62.5	64.19
Os04t0665700-01	Rice	nucleus	63.16	62.14
TraesCS6B01G194300.1	Wheat	cytosol	60.2	61.62
KRG93085	Soybean	cytosol	59.87	61.28
KRH36330	Soybean	nucleus	59.87	61.28
Solyc10g078750.1.1	Tomato	nucleus	58.88	61.09
KRH67059	Soybean	cytosol, nucleus	59.21	61.02
KRG95373	Soybean	cytosol	59.21	61.02
EES04688	Sorghum	nucleus	58.88	60.68
KRH71867	Soybean	nucleus	58.88	60.68
PGSC0003DMT400029683	Potato	cytosol	59.87	60.47
KRH67057	Soybean	nucleus	58.55	60.34
VIT_08s0007g06400.t01	Wine grape	cytosol	58.88	60.27
TraesCS6A01G166900.1	Wheat	cytosol	59.87	59.87
VIT_11s0016g04280.t01	Wine grape	cytosol	26.97	59.85
Solyc01g014850.2.1	Tomato	nucleus	49.01	59.6
CDY01104	Canola	cytosol	47.04	59.58
PGSC0003DMT400060957	Potato	cytosol	57.57	59.52
Solyc10g080480.1.1	Tomato	nucleus	56.58	59.52
Zm00001d036796_P004	Maize	extracellular	58.88	59.47
TraesCS6D01G155400.1	Wheat	cytosol	59.21	59.21
PGSC0003DMT400061829	Potato	plastid	43.42	59.19
PGSC0003DMT400025445	Potato	cytosol	55.26	59.15
CDY47892	Canola	cytosol	44.41	58.7
TraesCS7D01G396100.2	Wheat	cytosol	57.89	58.67
CDY08453	Canola	cytosol	47.04	58.61
Bra034776.1-P	Field mustard	cytosol	47.04	58.61
EES11610	Sorghum	cytosol	58.88	58.5
TraesCS7B01G302400.1	Wheat	cytosol	57.57	58.33
TraesCS7A01G402300.1	Wheat	cytosol	57.57	58.33
Os06t0618100-01	Rice	nucleus	49.67	58.3
CDX73836	Canola	cytosol	45.07	58.3
Bra001436.1-P	Field mustard	cytosol	45.07	58.3
TraesCS2D01G488300.1	Wheat	nucleus, plastid	58.22	58.22
KXG20371	Sorghum	cytosol	58.22	57.65
CDY00756	Canola	cytosol	44.74	57.63
Zm00001d001933_P001	Maize	nucleus	57.89	57.33
TraesCS2B01G515600.1	Wheat	nucleus, plastid	57.89	57.33
TraesCS2A01G488000.1	Wheat	nucleus, plastid	57.57	57.19
AT5G06770.1	Thale cress	cytosol	44.41	56.25
AT3G12130.1	Thale cress	cytosol	44.08	54.03
TraesCS6D01G155300.1	Wheat	mitochondrion	52.96	52.61
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	42.11	52.24
HORVU6Hr1G033840.5	Barley	mitochondrion	58.55	52.2
PGSC0003DMT400016195	Potato	cytosol	46.71	49.13
Solyc01g073940.2.1	Tomato	nucleus	46.38	48.79
Zm00001d046740_P001	Maize	plastid	52.96	47.35
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	30.26	47.18
TraesCS6D01G155200.1	Wheat	cytosol	32.24	46.89
CDY72512	Canola	nucleus	31.58	46.38
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	54.61	46.37
Solyc03g063200.2.1	Tomato	nucleus	24.34	45.4
Solyc01g014860.2.1	Tomato	nucleus	7.24	44.9
HORVU6Hr1G025870.1	Barley	cytosol	27.96	44.74
CDY05002	Canola	cytosol	22.7	44.23
Bra028719.1-P	Field mustard	cytosol	22.7	44.23
TraesCS6A01G166800.1	Wheat	cytosol	43.42	42.58
TraesCS6A01G166700.1	Wheat	cytosol	37.83	36.51
Zm00001d032312_P001	Maize	cytosol	16.78	34.46

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr1G19650_001	EnsemblPlants:GSMUA_Achr1P19650_001	EnsemblPlants:GSMUA_Achr1T19650_001	InterPro:IPR000571
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M0S1C3	PFAM:PF00013
PFAM:PF00642	PFAM:PF14608	PFscan:PS50084	PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF5
SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791	SUPFAM:SSF90229	UniParc:UPI0002949D2F	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

Zinc finger CCCH domain-containing protein 14 [Source:GMGC_GENE;Acc:GSMUA_Achr1G19650_001]

Coordinates

chr1:+:14714356..14719423

Molecular Weight (calculated)

31771.5 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.485

Length

304 amino acids

Sequence
(BLAST)

001: MEASRKRGPP DAANGSGPAS KRTRESDSFQ HGIGSKSKPC TKFFSTAGCP FGEGCHFLHY VPGGLQAVAQ MNNLGNPALA PPVRNPAALS AIHDGAPAPA
101: VKTRLCNKYN TAEGCKFGDR CNFAHGEQEL GKPKVSSTDG PMAPPMGGRP GGRYEPVRRY EPVPPSTVGA AASFGVSATA KISVDASLSG AIIGKGGVNT
201: KQICRLTGAK LSIREHESDP NLKNIELEGS FDQINRASAM VRELIVNISA TTGLPARNSA PAATTGSRSN YKTKLCENFG KGSCSFGDRC HFAHGESELR
301: RASG

Best Arabidopsis Sequence Match ( AT5G06770.6 )
(BLAST)

001: MFATEMESIS TGLGSKSKPC TKFFSTSGCP FGDNCHFLHY VPGGYNAAAQ MTNLRPPVSQ VSRNMQGSGG PGGRFSGRGD PGSGPVSIFG ASTSKISVDA
101: SLAGAIIGKG GIHSKQICRE TGAKLSIKDH ERDPNLKIIE LEGTFEQINV ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG
201: DRCHFAHGES ELRRSGIA

Arabidopsis Description

Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.