Factsheet for GSMUA_Achr4P28550_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P17340_001
GSMUA_Achr2P12550_001
GSMUA_Achr4P22370_001
GSMUA_Achr4P28550_001
GSMUA_Achr8P34280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	GSMUA_Achr1P17340_001	AT3G55460.1	21798944
AT5G04280.1	GSMUA_Achr8P34280_001	AT3G55460.1	21798944
AT5G04280.1	GSMUA_Achr2P12550_001	AT5G04280.1	21798944
AT5G04280.1	GSMUA_Achr4P22370_001	AT5G04280.1	21798944
AT5G04280.1	GSMUA_Achr4P28550_001	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P12550_001	Banana	nucleus	48.99	75.45
GSMUA_Achr4P22370_001	Banana	nucleus	62.32	69.13
VIT_13s0019g05080.t01	Wine grape	nucleus	48.41	60.07
KRG90774	Soybean	nucleus	47.25	58.42
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	46.67	54.21
VIT_08s0007g04870.t01	Wine grape	cytosol	38.55	53.63
TraesCS2B01G259400.1	Wheat	nucleus	45.22	53.24
TraesCS2D01G238900.1	Wheat	nucleus	44.93	52.9
TraesCS2A01G237400.1	Wheat	nucleus	44.93	52.9
TraesCS4D01G023800.2	Wheat	nucleus	48.7	52.83
TraesCS4A01G288500.1	Wheat	nucleus	48.41	52.68
PGSC0003DMT400043581	Potato	nucleus	41.16	52.4
TraesCS4B01G026400.1	Wheat	nucleus	48.41	52.35
OQU88590	Sorghum	nucleus	45.51	52.16
KXG37841	Sorghum	nucleus	47.54	51.9
Zm00001d019041_P001	Maize	extracellular, plasma membrane	44.06	51.88
Os03t0681900-01	Rice	nucleus	46.09	51.62
KRH35987	Soybean	nucleus	42.9	51.21
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	45.8	50.8
Solyc03g071560.2.1	Tomato	nucleus	43.48	47.77
GSMUA_Achr4P14550_001	Banana	nucleus	21.45	46.84
GSMUA_Achr7P27650_001	Banana	nucleus	17.68	45.86
GSMUA_Achr8P05200_001	Banana	cytosol	20.58	45.81
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	40.87	45.48
Bra005798.1-P	Field mustard	nucleus	40.29	45.42
CDY11283	Canola	nucleus	40.29	45.42
AT1G60650.2	Thale cress	nucleus	37.97	44.86
GSMUA_Achr3P30570_001	Banana	plasma membrane	22.03	44.71
CDX80910	Canola	nucleus	33.33	44.06
PGSC0003DMT400079815	Potato	nucleus	39.71	43.08
Solyc11g008210.1.1	Tomato	nucleus	35.94	42.03
CDY34132	Canola	nucleus	30.43	41.18
Zm00001d007799_P001	Maize	mitochondrion, plastid	43.19	38.8
GSMUA_Achr7P02750_001	Banana	mitochondrion	14.49	33.33
GSMUA_Achr6P34250_001	Banana	mitochondrion	9.86	30.91
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	14.2	29.17
GSMUA_Achr4P03230_001	Banana	mitochondrion	21.45	28.91
GSMUA_Achr6P35640_001	Banana	nucleus	11.59	28.78
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	9.57	28.7
GSMUA_Achr11P...	Banana	mitochondrion	8.7	27.78
GSMUA_Achr9P07090_001	Banana	mitochondrion	19.13	27.73
GSMUA_Achr4P16080_001	Banana	mitochondrion	15.07	27.37
GSMUA_Achr2P19090_001	Banana	mitochondrion	8.41	27.36
GSMUA_Achr11P...	Banana	mitochondrion	10.43	27.27
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	15.65	26.34
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	13.91	25.13
GSMUA_Achr8P07380_001	Banana	mitochondrion	8.41	21.48
GSMUA_Achr5P15860_001	Banana	plastid	10.43	21.18
GSMUA_Achr6P15340_001	Banana	plastid	10.43	20.45
GSMUA_Achr2P01230_001	Banana	nucleus	10.43	11.54

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr4G28550_001	EnsemblPlants:GSMUA_Achr4P28550_001	EnsemblPlants:GSMUA_Achr4T28550_001	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	UniProt:M0SSW7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0002968D56	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

RNA recognition motif containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G28550_001]

Coordinates

chr4:-:26947982..26954585

Molecular Weight (calculated)

38333.5 Da

IEP (calculated)

8.995

GRAVY (calculated)

-0.896

Length

345 amino acids

Sequence
(BLAST)

001: MDLDRVNIKH IPRGILSQLP LIYSTPFLRV SNRPLRVSAA VAPLFESLEV SFLVEMSAKE ENRIFVGGLS WDTTERRLEA EFSRFGKVIE AQIMLERDTG
101: RPRGFGFVTF SDPHAVEDAI SEMHERELDG RVISVNKAQP KMTTDDSAYG YNGGRYTSGG RGDYRGGDGP PPAGRSDECF KCGRLGHWAR DCPLAGGGSD
201: GRFSSRPKFG GGRGRGDRIG GPDRFNDRYD GGRYGNRDRI DSRDSRYSGG RDRFDNDSDH DRYGPPRDRF SGDRYGEHPD RYPQNGYSRE RSYDRDGPRG
301: GGGGGGYSRD GGPRGVRVGA HHPMMLAIDV HGLRLYAYFR VACGT

Best Arabidopsis Sequence Match ( AT5G04280.1 )
(BLAST)

001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY

Arabidopsis Description

RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.