Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P27650_001 | Banana | nucleus | 71.61 | 83.46 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 86.45 | 78.82 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 78.71 | 77.22 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 75.48 | 72.22 |
| KRH29453 | Soybean | nucleus | 62.58 | 69.29 |
| Solyc10g051390.1.1 | Tomato | nucleus | 52.26 | 68.64 |
| Bra030284.1-P | Field mustard | nucleus | 74.19 | 68.45 |
| KRH29451 | Soybean | nucleus | 75.48 | 68.42 |
| CDY15876 | Canola | nucleus | 74.19 | 68.05 |
| Solyc10g051380.1.1 | Tomato | nucleus | 56.77 | 67.69 |
| KRH29454 | Soybean | nucleus | 74.19 | 67.65 |
| KRH51528 | Soybean | nucleus | 79.35 | 67.58 |
| CDY72366 | Canola | nucleus | 74.19 | 67.25 |
| KRH29452 | Soybean | nucleus | 67.1 | 66.67 |
| PGSC0003DMT400083014 | Potato | nucleus | 70.32 | 65.66 |
| PGSC0003DMT400084258 | Potato | nucleus | 70.32 | 65.66 |
| PGSC0003DMT400084290 | Potato | nucleus | 70.32 | 65.66 |
| CDY70933 | Canola | nucleus | 70.97 | 65.48 |
| Bra031210.1-P | Field mustard | nucleus | 70.97 | 65.48 |
| CDX90323 | Canola | plastid | 69.68 | 65.45 |
| Bra010693.1-P | Field mustard | nucleus | 69.68 | 65.45 |
| CDY59763 | Canola | nucleus | 70.32 | 65.27 |
| Bra001972.1-P | Field mustard | nucleus | 69.03 | 65.24 |
| Zm00001d041246_P001 | Maize | nucleus | 60.65 | 64.83 |
| Os12t0632000-01 | Rice | nucleus | 67.74 | 64.81 |
| PGSC0003DMT400001879 | Potato | cytosol | 73.55 | 64.77 |
| CDY46213 | Canola | nucleus | 50.97 | 64.75 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 64.52 | 64.52 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 67.74 | 64.42 |
| CDY42616 | Canola | cytosol | 65.16 | 64.33 |
| CDY41969 | Canola | cytosol | 52.9 | 64.06 |
| Solyc01g109660.2.1 | Tomato | extracellular | 72.26 | 64.0 |
| Zm00001d031168_P001 | Maize | plastid | 63.23 | 63.23 |
| TraesCS4A01G293000.1 | Wheat | plastid | 65.81 | 62.96 |
| KRH60842 | Soybean | mitochondrion | 74.84 | 62.7 |
| AT2G21660.1 | Thale cress | nucleus | 70.97 | 62.5 |
| EES16438 | Sorghum | nucleus | 66.45 | 62.42 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 66.45 | 62.05 |
| CDY12133 | Canola | cytosol | 63.23 | 62.03 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 64.52 | 61.73 |
| CDX71276 | Canola | nucleus | 68.39 | 61.63 |
| AT4G39260.1 | Thale cress | nucleus | 67.1 | 61.54 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 63.87 | 61.11 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 65.81 | 61.08 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 62.58 | 61.01 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 63.23 | 60.49 |
| Bra011869.1-P | Field mustard | cytosol | 63.23 | 60.49 |
| PGSC0003DMT400084266 | Potato | extracellular | 62.58 | 60.25 |
| KXG37870 | Sorghum | nucleus | 65.81 | 60.0 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 65.16 | 59.41 |
| TraesCS5D01G020900.1 | Wheat | plastid | 65.81 | 58.62 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 31.61 | 49.49 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 54.19 | 48.55 |
| Os03t0670700-01 | Rice | nucleus | 61.29 | 48.47 |
| GSMUA_Achr7P02750_001 | Banana | mitochondrion | 34.84 | 36.0 |
| GSMUA_Achr2P19090_001 | Banana | mitochondrion | 20.65 | 30.19 |
| GSMUA_Achr9P07090_001 | Banana | mitochondrion | 45.16 | 29.41 |
| GSMUA_Achr4P16080_001 | Banana | mitochondrion | 35.48 | 28.95 |
| GSMUA_Achr4P03230_001 | Banana | mitochondrion | 47.74 | 28.91 |
| GSMUA_Achr11P... | Banana | mitochondrion | 24.52 | 28.79 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 30.97 | 28.57 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 24.52 | 27.34 |
| GSMUA_Achr6P34250_001 | Banana | mitochondrion | 19.35 | 27.27 |
| GSMUA_Achr2P12550_001 | Banana | nucleus | 38.71 | 26.79 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 32.26 | 26.18 |
| GSMUA_Achr5P26410_001 | Banana | cytosol, mitochondrion, nucleus | 19.35 | 26.09 |
| GSMUA_Achr4P22370_001 | Banana | nucleus | 50.97 | 25.4 |
| GSMUA_Achr3P22540_001 | Banana | nucleus, peroxisome, plasma membrane | 33.55 | 25.37 |
| GSMUA_Achr11P... | Banana | mitochondrion | 17.42 | 25.0 |
| GSMUA_Achr6P15340_001 | Banana | plastid | 25.81 | 22.73 |
| GSMUA_Achr8P07380_001 | Banana | mitochondrion | 18.71 | 21.48 |
| GSMUA_Achr4P28550_001 | Banana | cytosol, mitochondrion, nucleus | 45.81 | 20.58 |
| GSMUA_Achr5P15860_001 | Banana | plastid | 21.29 | 19.41 |
| GSMUA_Achr2P01230_001 | Banana | nucleus | 21.29 | 10.58 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P05200_001 | EnsemblPlants:GSMUA_Achr8T05200_001 | EnsemblPlantsGene:GSMUA_Achr8G05200_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR45429 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000295B0E0 | UniProt:M0TMS3 | MapMan:16.7.2 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G05200_001]
Coordinates
chr8:-:3392300..3393513
Molecular Weight (calculated)
15551.7 Da
IEP (calculated)
5.239
GRAVY (calculated)
-0.657
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSDSEFRC FVGGLAWATD DASLERAFSP FGEIIESKII NDKETGRSRG FGFVTFRDEQ SMRDAIEGMN GQILDGRSIT VNEAQARSGG GGFRSGGGGG
101: YGGGGYGGGG GGYGGGGGGY GGGGGYGRDR GYAGGDGASR FPRGGGGASD GNWRK
101: YGGGGYGGGG GGYGGGGGGY GGGGGYGRDR GYAGGDGASR FPRGGGGASD GNWRK
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.