Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G246400.1 | Wheat | nucleus | 98.15 | 98.15 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 93.83 | 98.06 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 97.53 | 97.53 |
| Bra030284.1-P | Field mustard | nucleus | 70.37 | 67.86 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 55.56 | 67.67 |
| CDY15876 | Canola | nucleus | 70.37 | 67.46 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 67.28 | 67.28 |
| Solyc10g051390.1.1 | Tomato | nucleus | 48.77 | 66.95 |
| CDY72366 | Canola | nucleus | 69.75 | 66.08 |
| Bra031210.1-P | Field mustard | nucleus | 68.52 | 66.07 |
| CDY70933 | Canola | nucleus | 68.52 | 66.07 |
| Os12t0632000-01 | Rice | nucleus | 66.05 | 66.05 |
| CDY59763 | Canola | nucleus | 67.9 | 65.87 |
| CDY41969 | Canola | cytosol | 51.85 | 65.62 |
| Bra010693.1-P | Field mustard | nucleus | 66.67 | 65.45 |
| CDX90323 | Canola | plastid | 66.67 | 65.45 |
| KRH29453 | Soybean | nucleus | 56.17 | 65.0 |
| KRH29451 | Soybean | nucleus | 68.52 | 64.91 |
| CDY42616 | Canola | cytosol | 62.35 | 64.33 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 62.96 | 64.15 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 60.49 | 63.23 |
| Zm00001d041246_P001 | Maize | nucleus | 56.17 | 62.76 |
| AT2G21660.1 | Thale cress | nucleus | 67.9 | 62.5 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 65.43 | 62.35 |
| Solyc01g109660.2.1 | Tomato | extracellular | 66.67 | 61.71 |
| Bra001972.1-P | Field mustard | nucleus | 62.35 | 61.59 |
| KRH51528 | Soybean | nucleus | 69.14 | 61.54 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 59.88 | 61.39 |
| PGSC0003DMT400001879 | Potato | cytosol | 66.67 | 61.36 |
| EES16438 | Sorghum | nucleus | 62.35 | 61.21 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 64.2 | 61.18 |
| Bra011869.1-P | Field mustard | cytosol | 61.11 | 61.11 |
| KRH29452 | Soybean | nucleus | 58.64 | 60.9 |
| Zm00001d031168_P001 | Maize | plastid | 58.02 | 60.65 |
| KXG37870 | Sorghum | nucleus | 63.58 | 60.59 |
| AT4G39260.1 | Thale cress | nucleus | 62.96 | 60.35 |
| PGSC0003DMT400084266 | Potato | extracellular | 59.88 | 60.25 |
| Solyc10g051380.1.1 | Tomato | nucleus | 48.15 | 60.0 |
| CDY12133 | Canola | cytosol | 58.02 | 59.49 |
| KRH29454 | Soybean | nucleus | 62.35 | 59.41 |
| KRH60842 | Soybean | mitochondrion | 67.28 | 58.92 |
| CDY46213 | Canola | nucleus | 43.83 | 58.2 |
| CDX71276 | Canola | nucleus | 61.73 | 58.14 |
| TraesCS4A01G293000.1 | Wheat | plastid | 58.02 | 58.02 |
| PGSC0003DMT400084258 | Potato | nucleus | 58.02 | 56.63 |
| PGSC0003DMT400084290 | Potato | nucleus | 58.02 | 56.63 |
| PGSC0003DMT400083014 | Potato | nucleus | 58.02 | 56.63 |
| TraesCS3A01G422600.1 | Wheat | nucleus | 41.36 | 38.73 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 44.44 | 34.12 |
| TraesCS4A01G100000.1 | Wheat | mitochondrion | 20.37 | 31.73 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 45.68 | 31.22 |
| TraesCS3A01G534200.1 | Wheat | mitochondrion | 20.37 | 30.28 |
| TraesCS1A01G405700.1 | Wheat | mitochondrion | 20.37 | 29.73 |
| TraesCS3A01G428400.1 | Wheat | mitochondrion | 40.74 | 29.2 |
| TraesCS2A01G212000.1 | Wheat | mitochondrion | 22.84 | 26.43 |
| TraesCS7A01G307200.1 | Wheat | plastid | 24.69 | 26.14 |
| TraesCS3A01G418900.1 | Wheat | mitochondrion | 23.46 | 26.03 |
| TraesCS2A01G296100.1 | Wheat | mitochondrion | 22.22 | 25.9 |
| TraesCS5A01G460900.1 | Wheat | mitochondrion | 46.91 | 24.92 |
| TraesCS4A01G288500.1 | Wheat | nucleus | 47.53 | 24.29 |
| TraesCS2A01G237400.1 | Wheat | nucleus | 43.83 | 24.23 |
| TraesCS4A01G099700.1 | Wheat | plastid | 24.69 | 23.26 |
| TraesCS2A01G176700.1 | Wheat | mitochondrion | 43.83 | 9.69 |
| TraesCS6A01G292000.1 | Wheat | plastid | 20.37 | 8.51 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G216500.1 | EnsemblPlantsGene:TraesCS6A01G216500 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44202 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:16.7.2 |
Description
No Description!
Coordinates
chr6A:-:398539991..398540563
Molecular Weight (calculated)
16477.5 Da
IEP (calculated)
4.792
GRAVY (calculated)
-0.898
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MADADGAEYR CFVGSLSWNT DDRGLEAAFS SFGEILDAKI INDRETGRSR GFGFVSFSSE QAMQDAIEGM NGKELDGRSI VVNEAQSRGY GGGGGGRYGG
101: GGGGGGGRYG GGGGYGQRRD DGYGDDGYGG GRGYGGGRYG GGRGYGGRRD GGYGRGGNSD GY
101: GGGGGGGRYG GGGGYGQRRD DGYGDDGYGG GRGYGGGRYG GGRGYGGRRD GGYGRGGNSD GY
1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW
Arabidopsis Description
RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.