Factsheet for TraesCS7B01G148000.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

mitochondrion 2
peroxisome 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plastid
Any Predictor:	peroxisome
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	peroxisome

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1
TraesCS7B01G148000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT2G13360.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT2G13360.1	TraesCS3D01G099700.1	AT2G01950.1	19000166
AT2G13360.1	TraesCS7B01G148000.1	AT2G13360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0502700-01	Rice	extracellular	91.52	91.29
Zm00001d031403_P001	Maize	peroxisome	47.63	88.84
EES14284	Sorghum	cytosol	89.03	88.81
Solyc12g099930.1.1	Tomato	nucleus, plastid	87.78	87.78
PGSC0003DMT400011851	Potato	cytosol	87.78	87.78
Bra013148.1-P	Field mustard	peroxisome	86.28	86.28
CDX93112	Canola	peroxisome	86.28	86.28
CDX89604	Canola	peroxisome	86.03	86.03
CDY37208	Canola	peroxisome	85.79	85.79
CDX81443	Canola	peroxisome	85.54	85.54
Bra037207.1-P	Field mustard	peroxisome	85.54	85.54
GSMUA_Achr8P24400_001	Banana	peroxisome	76.56	85.52
Zm00001d031349_P002	Maize	plastid	85.54	85.11
KRH45948	Soybean	peroxisome	84.79	84.79
AT2G13360.1	Thale cress	peroxisome	84.54	84.54
Zm00001d031379_P001	Maize	plastid	81.8	84.1
GSMUA_Achr7P20440_001	Banana	unclear	84.04	84.04
KRG99049	Soybean	peroxisome	83.79	83.79
VIT_06s0009g03740.t01	Wine grape	extracellular	82.54	82.54
HORVU7Hr1G049870.3	Barley	plastid	89.78	82.19
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	59.85	81.91
Zm00001d031402_P001	Maize	cytosol	19.95	73.39
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	60.35	70.14
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	15.71	67.74

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	InterPro:Aminotrans_V_PyrdxlP_BS
InterPro:Aminotrans_V_dom	GO:GO:0003674	GO:GO:0003824	InterPro:IPR015421	InterPro:IPR015422	PFAM:PF00266
PIRSF:PIRSF000524	ScanProsite:PS00595	PANTHER:PTHR21152	PANTHER:PTHR21152:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	InterPro:SP_NH2Trfase/AEP_transaminase	SUPFAM:SSF53383	EnsemblPlantsGene:TraesCS7B01G148000	EnsemblPlants:TraesCS7B01G148000.1	TIGR:cd06451
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:194590091..194591538

Molecular Weight (calculated)

43843.0 Da

IEP (calculated)

8.437

GRAVY (calculated)

0.026

Length

401 amino acids

Sequence
(BLAST)

001: MDYMNGPGRN HLFVPGPVNI PDQVIRAMSR QNEDYRSPAI PALTKTLLED VKKIFKTTTG TPFLFPTTGT GAWESALTNT LSPGDRIVSF SLGQFSLLWI
101: DQQQRLGFSV DVVESDWGYG ADLGVLESKL RSDSQHTIKA ICIVHNETAT GVTNDLHAVR KLLDAYRHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE AAKTAKSVRV FFDWKDYLKF YKMGTYWPYT PSIQLLYGLR AGLDLLFEEG LDNVIKRHTR LGTATRLAVA AWGLKNCTAK
301: EENFSDTVTA VVVPPYIDSS EIVKHAWKRY NLSLGLGLNK VAGKVFRIGH LGHLNELQLL GCLSGVEMVL KDIGYPVKLG SGVAAAAAYL SNSTPLIPSR
401: I

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.