Factsheet for Solyc12g099930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1
Solyc06g075780.1.1
Solyc11g073060.1.1
Solyc12g099930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT2G13360.1	Solyc12g099930.1.1	AT2G13360.1	21798944
AT2G13360.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT2G13360.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011851	Potato	cytosol	99.75	99.75
CDX81443	Canola	peroxisome	89.28	89.28
CDY37208	Canola	peroxisome	89.28	89.28
Bra037207.1-P	Field mustard	peroxisome	89.03	89.03
Bra013148.1-P	Field mustard	peroxisome	88.78	88.78
CDX93112	Canola	peroxisome	88.78	88.78
CDX89604	Canola	peroxisome	88.53	88.53
AT2G13360.1	Thale cress	peroxisome	88.03	88.03
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	87.78	87.78
Os08t0502700-01	Rice	extracellular	87.28	87.06
VIT_06s0009g03740.t01	Wine grape	extracellular	87.03	87.03
GSMUA_Achr7P20440_001	Banana	unclear	87.03	87.03
Zm00001d031403_P001	Maize	peroxisome	46.63	86.98
GSMUA_Achr8P24400_001	Banana	peroxisome	77.31	86.35
KRH45948	Soybean	peroxisome	86.03	86.03
KRG99049	Soybean	peroxisome	85.29	85.29
EES14284	Sorghum	cytosol	84.79	84.58
Zm00001d031349_P002	Maize	plastid	83.79	83.37
Zm00001d031379_P001	Maize	plastid	80.05	82.31
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	57.86	79.18
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	16.96	73.12
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	62.34	72.46
HORVU7Hr1G049870.3	Barley	plastid	79.05	72.37
Zm00001d031402_P001	Maize	cytosol	19.45	71.56

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	InterPro:Aminotrans_V_PyrdxlP_BS
InterPro:Aminotrans_V_dom	UniProt:G8Z261	GO:GO:0003674	GO:GO:0003824	GO:GO:0004760	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152
GO:GO:0008453	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019265	EMBL:GQ261239
InterPro:IPR015421	InterPro:IPR015422	PFAM:PF00266	PIRSF:PIRSF000524	ScanProsite:PS00595	PANTHER:PTHR21152
PANTHER:PTHR21152:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	InterPro:SP_NH2Trfase/AEP_transaminase	SUPFAM:SSF53383
EnsemblPlantsGene:Solyc12g099930.1	EnsemblPlants:Solyc12g099930.1.1	UniParc:UPI000243C63D	SEG:seg	:	:

Description

Serine--glyoxylate aminotransferase [Source:Projected from Arabidopsis thaliana (AT2G13360) UniProtKB/Swiss-Prot;Acc:Q56YA5]

Coordinates

chr12:+:66883401..66886255

Molecular Weight (calculated)

44006.0 Da

IEP (calculated)

8.205

GRAVY (calculated)

0.007

Length

401 amino acids

Sequence
(BLAST)

001: MDYVNGPGRN HLFVPGPVNI PEQVLRAMNR NNEDYRSPAV PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRTVSF LIGQFSLLWI
101: DQQKRLNFDV DVVESDWGQG ANLEVLASKI AEDKSHTIKA VCIVHNETAT GVTNNLATVR KILDHYQHPA LFLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ASKTAKSVRV FFDWSDYLKF YKLGTYWPYT PSIQLLYGLR AALDLLFEEG LDNVIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWFSDTVTA VVVPPHIESS EIVKRAWKRY NLSLGLGLNK VAGKVFRIGH LGNLNELQLL GCLAGVEMVL KDIGYPVKFG SGVAAASAFL QNSTPLIPSR
401: I

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.