CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99049
KRH10294
KRH23029
KRH24840
KRH29844
KRH33429
KRH42483
KRH45948
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	KRH42483	AT2G01950.1	19000166
AT2G13360.1	KRH58580	AT2G01950.1	19000166
AT2G13360.1	KRG99049	AT2G13360.1	21798944
AT2G13360.1	KRH33429	AT2G13360.1	21798944
AT2G13360.1	KRH45948	AT2G13360.1	21798944
AT2G13360.1	KRH10294	AT3G46090.1	17259181
AT2G13360.1	KRH23029	AT3G46090.1	17259181
AT2G13360.1	KRH24840	AT3G46090.1	17259181
AT2G13360.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99049	Soybean	peroxisome	98.25	98.25
CDX89604	Canola	peroxisome	86.28	86.28
CDY37208	Canola	peroxisome	86.28	86.28
Bra013148.1-P	Field mustard	peroxisome	86.03	86.03
Solyc12g099930.1.1	Tomato	nucleus, plastid	86.03	86.03
PGSC0003DMT400011851	Potato	cytosol	86.03	86.03
CDX93112	Canola	peroxisome	86.03	86.03
CDX81443	Canola	peroxisome	86.03	86.03
Bra037207.1-P	Field mustard	peroxisome	86.03	86.03
VIT_06s0009g03740.t01	Wine grape	extracellular	85.29	85.29
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	84.79	84.79
AT2G13360.1	Thale cress	peroxisome	84.79	84.79
Os08t0502700-01	Rice	extracellular	84.29	84.08
GSMUA_Achr7P20440_001	Banana	unclear	84.04	84.04
EES14284	Sorghum	cytosol	83.54	83.33
GSMUA_Achr8P24400_001	Banana	peroxisome	74.06	82.73
Zm00001d031403_P001	Maize	peroxisome	44.14	82.33
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	18.7	80.65
Zm00001d031349_P002	Maize	plastid	80.8	80.4
Zm00001d031379_P001	Maize	plastid	77.31	79.49
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	55.86	76.45
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	61.35	71.3
HORVU7Hr1G049870.3	Barley	plastid	76.81	70.32
Zm00001d031402_P001	Maize	cytosol	18.45	67.89

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	EntrezGene:732565
EMBL:ACUP02005298	InterPro:Aminotrans_V_PyrdxlP_BS	InterPro:Aminotrans_V_dom	EMBL:BT098078	UniProt:C6TK73	EnsemblPlantsGene:GLYMA_08G302600
GO:GO:0003674	GO:GO:0003824	GO:GO:0004760	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0008453	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019265	InterPro:IPR015421	InterPro:IPR015422	ProteinID:KRH45944.1
ProteinID:KRH45945.1	ProteinID:KRH45946.1	ProteinID:KRH45947.1	EnsemblPlants:KRH45948	ProteinID:KRH45948	ProteinID:KRH45948.1
PFAM:PF00266	PIRSF:PIRSF000524	ScanProsite:PS00595	PANTHER:PTHR21152	PANTHER:PTHR21152:SF29	MetaCyc:PWY-6832
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	InterPro:SP_NH2Trfase/AEP_transaminase	SUPFAM:SSF53383	UniParc:UPI00019908C5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:42073162..42078816

Molecular Weight (calculated)

44278.6 Da

IEP (calculated)

8.300

GRAVY (calculated)

0.025

Length

401 amino acids

Sequence
(BLAST)

001: MDYFNAPGRN HLFVPGPVNI PDQIIRAMNR NNEDYRSPAI PAMTKTLLED VKKIFKTTTG TPFLIPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQQRLKFNV DVVESEWGHG AKLDVLESKI ASDTSHTIKA ICIVHNETAT GVTNDLAKVR QILDSYQHPA LLIVDGVSSI CALDFRMDEW GVDVAITGSQ
201: KALSLPTGIG IVVAGPKAIE ASKHAKSLRV FFDWKDYLKF YQLGTYWPYT PSIHLLYGLR AALDLIFEEG LENVIARHSR LGKATRLAVE AWGLKNCTQK
301: EEWYSDTVTA VLVPAYIDST EIVRRAWKRY NLSLGLGLNK VAGKVFRIGH LGHLNELQLL GCLAGVEMIL KDVGYPVKLG SGVAAASAYL QNTIPMIPSR
401: I

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.