CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, extracellular, cytosol

Predictor Summary:

plastid 2
peroxisome 3
mitochondrion 1
cytosol 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99049
KRH10294
KRH23029
KRH24840
KRH29844
KRH33429
KRH42483
KRH45948
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	KRH42483	AT2G01950.1	19000166
AT2G13360.1	KRH58580	AT2G01950.1	19000166
AT2G13360.1	KRG99049	AT2G13360.1	21798944
AT2G13360.1	KRH33429	AT2G13360.1	21798944
AT2G13360.1	KRH45948	AT2G13360.1	21798944
AT2G13360.1	KRH10294	AT3G46090.1	17259181
AT2G13360.1	KRH23029	AT3G46090.1	17259181
AT2G13360.1	KRH24840	AT3G46090.1	17259181
AT2G13360.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031403_P001	Maize	peroxisome	64.52	27.91
KRG99049	Soybean	peroxisome	81.72	18.95
KRH45948	Soybean	peroxisome	80.65	18.7
GSMUA_Achr8P24400_001	Banana	peroxisome	68.82	17.83
Solyc12g099930.1.1	Tomato	nucleus, plastid	73.12	16.96
PGSC0003DMT400011851	Potato	cytosol	73.12	16.96
CDX89604	Canola	peroxisome	72.04	16.71
AT2G13360.1	Thale cress	peroxisome	72.04	16.71
Os08t0502700-01	Rice	extracellular	72.04	16.67
Bra013148.1-P	Field mustard	peroxisome	70.97	16.46
Bra037207.1-P	Field mustard	peroxisome	70.97	16.46
CDY37208	Canola	peroxisome	70.97	16.46
CDX93112	Canola	peroxisome	70.97	16.46
CDX81443	Canola	peroxisome	70.97	16.46
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	60.22	16.23
GSMUA_Achr7P20440_001	Banana	unclear	68.82	15.96
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	67.74	15.71
VIT_06s0009g03740.t01	Wine grape	extracellular	66.67	15.46
EES14284	Sorghum	cytosol	65.59	15.17
Zm00001d031349_P002	Maize	plastid	65.59	15.14
HORVU7Hr1G049870.3	Barley	plastid	67.74	14.38
Zm00001d031379_P001	Maize	plastid	53.76	12.82
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	25.81	8.19
Zm00001d031402_P001	Maize	cytosol	1.08	0.92

Protein Annotations

Gene3D:3.40.640.10	MapMan:35.1	EMBL:ACUP02006493	EnsemblPlantsGene:GLYMA_10G122900	GO:GO:0003674	GO:GO:0003824
GO:GO:0004760	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777
GO:GO:0008150	GO:GO:0008152	GO:GO:0008453	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019265	InterPro:IPR015421	UniProt:K7LIY6	EnsemblPlants:KRH33429	ProteinID:KRH33429	ProteinID:KRH33429.1
PANTHER:PTHR21152	PANTHER:PTHR21152:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI000295E446

Description

hypothetical protein

Coordinates

chr10:+:31786567..31787187

Molecular Weight (calculated)

10839.2 Da

IEP (calculated)

7.747

GRAVY (calculated)

0.211

Length

93 amino acids

Sequence
(BLAST)

1: MLVPLDIVSA YLRAIEASKH AKSLRVFFDW KDYLKFYQLG TYWPYTPSIH LLYGLRAALD LIFEEGLENV IARHIYLGKA WSIVLETQYV PST

Best Arabidopsis Sequence Match ( AT2G13360.1 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.