Factsheet for Zm00001d031379_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001
Zm00001d031349_P002
Zm00001d031364_P001
Zm00001d031379_P001
Zm00001d031402_P001
Zm00001d031403_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT2G13360.1	Zm00001d031349_P002	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031364_P001	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031379_P001	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031402_P001	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031403_P001	AT2G13360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031349_P002	Maize	plastid	98.21	95.04
Zm00001d031403_P001	Maize	peroxisome	51.54	93.49
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	67.18	89.42
EES14284	Sorghum	cytosol	91.28	88.56
Os08t0502700-01	Rice	extracellular	86.92	84.33
Zm00001d031402_P001	Maize	cytosol	23.08	82.57
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	84.1	81.8
GSMUA_Achr8P24400_001	Banana	peroxisome	74.36	80.78
Solyc12g099930.1.1	Tomato	nucleus, plastid	82.31	80.05
GSMUA_Achr7P20440_001	Banana	unclear	82.05	79.8
PGSC0003DMT400011851	Potato	cytosol	82.05	79.8
Bra037207.1-P	Field mustard	peroxisome	81.28	79.05
CDY37208	Canola	peroxisome	81.28	79.05
Bra013148.1-P	Field mustard	peroxisome	81.03	78.8
CDX93112	Canola	peroxisome	81.03	78.8
CDX81443	Canola	peroxisome	81.03	78.8
CDX89604	Canola	peroxisome	80.77	78.55
AT2G13360.1	Thale cress	peroxisome	80.0	77.81
VIT_06s0009g03740.t01	Wine grape	extracellular	79.74	77.56
KRH45948	Soybean	peroxisome	79.49	77.31
KRG99049	Soybean	peroxisome	79.49	77.31
HORVU7Hr1G049870.3	Barley	plastid	74.1	65.98
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	57.95	65.51
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	12.82	53.76

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	UniProt:A0A1D6KIH4
InterPro:Aminotrans_V_PyrdxlP_BS	InterPro:Aminotrans_V_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008483	GO:GO:0016740
InterPro:IPR015421	InterPro:IPR015422	ProteinID:ONM02788.1	PFAM:PF00266	PIRSF:PIRSF000524	ScanProsite:PS00595
PANTHER:PTHR21152	PANTHER:PTHR21152:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	InterPro:SP_NH2Trfase/AEP_transaminase
SUPFAM:SSF53383	UniParc:UPI000844256D	EnsemblPlantsGene:Zm00001d031379	EnsemblPlants:Zm00001d031379_P001	EnsemblPlants:Zm00001d031379_T001	SEG:seg

Description

Serine--glyoxylate aminotransferase

Coordinates

chr1:+:187897030..187898721

Molecular Weight (calculated)

42417.3 Da

IEP (calculated)

6.943

GRAVY (calculated)

0.075

Length

390 amino acids

Sequence
(BLAST)

001: MVDYVYGPGR THLFVPGPVN IPDPVIRAMN RQNEDYRSPA VPALTKVLLE DVKKIFKTTT GTPLMIPTTG TGAWESALIN TLSSGDRVVS FLIGQFSLLW
101: IDQQRRLGFD VDAVESEWGQ GADLAALERR LRDDAPRHAI KAVAIVHNET ATGVTNDLAA VRALLDKHAH PALLLVDGVS SICALDFRMD EWGVDVALTG
201: SQKALSMPTG MGIVCASPRA LEASKTARFY DMGTYWPYTP SIQLLYGLRT ALDLIFEEGL DNVVRRHNRL GTATRLAVEA WGLSNCCQKE EWFSDIVTAV
301: VVPPNIDSAE VVRHAWKRYN LSLGLGLNKV AGKVFRIGHL GNLNELQLLG CLSGVEMVLK DVGYPVKLGS GVAAAAAYLS NSTPLIPSRI

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.