Factsheet for VIT_06s0009g03740.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 23391302

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01
VIT_06s0009g03740.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT2G13360.1	VIT_06s0009g03740.t01	AT2G13360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099930.1.1	Tomato	nucleus, plastid	87.03	87.03
PGSC0003DMT400011851	Potato	cytosol	87.03	87.03
KRH45948	Soybean	peroxisome	85.29	85.29
GSMUA_Achr7P20440_001	Banana	unclear	85.04	85.04
Bra037207.1-P	Field mustard	peroxisome	84.54	84.54
CDY37208	Canola	peroxisome	84.54	84.54
KRG99049	Soybean	peroxisome	84.54	84.54
CDX81443	Canola	peroxisome	84.29	84.29
Bra013148.1-P	Field mustard	peroxisome	84.04	84.04
CDX93112	Canola	peroxisome	84.04	84.04
CDX89604	Canola	peroxisome	83.79	83.79
GSMUA_Achr8P24400_001	Banana	peroxisome	74.81	83.57
Zm00001d031403_P001	Maize	peroxisome	44.64	83.26
AT2G13360.1	Thale cress	peroxisome	82.79	82.79
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	82.54	82.54
EES14284	Sorghum	cytosol	82.54	82.34
Os08t0502700-01	Rice	extracellular	82.54	82.34
Zm00001d031349_P002	Maize	plastid	80.8	80.4
Zm00001d031379_P001	Maize	plastid	77.56	79.74
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	56.36	77.13
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	62.59	72.75
HORVU7Hr1G049870.3	Barley	plastid	75.31	68.95
Zm00001d031402_P001	Maize	cytosol	18.45	67.89
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	15.46	66.67

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	EntrezGene:100261927	wikigene:100261927	Gene3D:3.40.640.10	Gene3D:3.90.1150.10
MapMan:4.1.2.1.3	EMBL:AM484533	InterPro:Aminotrans_V_PyrdxlP_BS	InterPro:Aminotrans_V_dom	ProteinID:CAN84001	ProteinID:CAN84001.1
ProteinID:CCB49029	ProteinID:CCB49029.1	UniProt:F6HA09	EMBL:FN595504	GO:GO:0003674	GO:GO:0003824
GO:GO:0004760	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777
GO:GO:0008150	GO:GO:0008152	GO:GO:0008453	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019265	InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100261927	wikigene:LOC100261927	PFAM:PF00266
PIRSF:PIRSF000524	ScanProsite:PS00595	PANTHER:PTHR21152	PANTHER:PTHR21152:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	InterPro:SP_NH2Trfase/AEP_transaminase	SUPFAM:SSF53383	TIGR:TC61755	UniParc:UPI00015CA1EC	ArrayExpress:VIT_06s0009g03740
EnsemblPlantsGene:VIT_06s0009g03740	EnsemblPlants:VIT_06s0009g03740.t01	unigene:Vvi.1198	RefSeq:XP_002279236	RefSeq:XP_002279236.1	RefSeq:XP_010651495.1
RefSeq:XP_019076254.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:17018365..17020576

Molecular Weight (calculated)

44337.6 Da

IEP (calculated)

7.915

GRAVY (calculated)

0.003

Length

401 amino acids

Sequence
(BLAST)

001: MDRYFAPGTN HLFVPGPVNI PDHVIRAMNR NNEDYRAPPI PALTKDLLED VKKIFKTTTG TPFLIPTTGT GAWESALTNT LSPGDRTVSF LIGQFSLLWI
101: DQQKRLRFNV DVIESEWGQG ANLEILAEKI AADRAHTIKA VCIVHNETAT GVTNNLAAVR RILDEYRHPA LFLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGMG IVCAGPKALE ASKSAQSVRF FFDWNDYLKF YKLGTFWPYT PSIQLLYGMR AALDIIFEEG LDNVIERHSR LGKATRLAVE AWGLKNCTQR
301: EEWFSDTVTA VVVPPYIDST EIVKRAWKRY NLSLGLGLNK VAGKVFRIGH LGHLNDVQLL GCLAGVEMVL KDVGYPVKMG SGVGAASAYL QNTIPLIPSR
401: I

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.