CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99049
KRH10294
KRH23029
KRH24840
KRH29844
KRH33429
KRH42483
KRH45948
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	KRH42483	AT2G01950.1	19000166
AT2G13360.1	KRH58580	AT2G01950.1	19000166
AT2G13360.1	KRG99049	AT2G13360.1	21798944
AT2G13360.1	KRH33429	AT2G13360.1	21798944
AT2G13360.1	KRH45948	AT2G13360.1	21798944
AT2G13360.1	KRH10294	AT3G46090.1	17259181
AT2G13360.1	KRH23029	AT3G46090.1	17259181
AT2G13360.1	KRH24840	AT3G46090.1	17259181
AT2G13360.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45948	Soybean	peroxisome	98.25	98.25
CDY37208	Canola	peroxisome	86.03	86.03
Bra037207.1-P	Field mustard	peroxisome	85.79	85.79
CDX81443	Canola	peroxisome	85.79	85.79
CDX89604	Canola	peroxisome	85.54	85.54
Bra013148.1-P	Field mustard	peroxisome	85.29	85.29
CDX93112	Canola	peroxisome	85.29	85.29
Solyc12g099930.1.1	Tomato	nucleus, plastid	85.29	85.29
PGSC0003DMT400011851	Potato	cytosol	85.04	85.04
AT2G13360.1	Thale cress	peroxisome	84.54	84.54
VIT_06s0009g03740.t01	Wine grape	extracellular	84.54	84.54
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	83.79	83.79
GSMUA_Achr7P20440_001	Banana	unclear	83.29	83.29
Os08t0502700-01	Rice	extracellular	83.29	83.08
Zm00001d031403_P001	Maize	peroxisome	44.39	82.79
GSMUA_Achr8P24400_001	Banana	peroxisome	74.06	82.73
EES14284	Sorghum	cytosol	82.54	82.34
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	18.95	81.72
Zm00001d031349_P002	Maize	plastid	80.8	80.4
Zm00001d031379_P001	Maize	plastid	77.31	79.49
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	55.61	76.11
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	60.85	70.72
HORVU7Hr1G049870.3	Barley	plastid	76.06	69.63
Zm00001d031402_P001	Maize	cytosol	17.96	66.06

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	EMBL:ACUP02010956
InterPro:Aminotrans_V_PyrdxlP_BS	InterPro:Aminotrans_V_dom	EnsemblPlantsGene:GLYMA_18G116900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004760
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150
GO:GO:0008152	GO:GO:0008453	GO:GO:0008483	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019265	InterPro:IPR015421	InterPro:IPR015422	UniProt:K7MRF5	EnsemblPlants:KRG99049	ProteinID:KRG99049
ProteinID:KRG99049.1	PFAM:PF00266	PIRSF:PIRSF000524	ScanProsite:PS00595	PANTHER:PTHR21152	PANTHER:PTHR21152:SF29
MetaCyc:PWY-6832	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	InterPro:SP_NH2Trfase/AEP_transaminase	SUPFAM:SSF53383
UniParc:UPI000233E576	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:14361159..14366764

Molecular Weight (calculated)

44327.7 Da

IEP (calculated)

8.292

GRAVY (calculated)

0.046

Length

401 amino acids

Sequence
(BLAST)

001: MDYFNAPGRN HLFVPGPVNI PDQIIRAMNR NNEDYRSPAI PAMTKTLLED VKKIFKTITG IPFLIPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQQRLKFNV DVVESEWGQG AKLDVLESKI ASDTSHTIKA ICIVHNETAT GVTNDLAKVR QILDSYRHPA LLIVDGVSSI CALDFRMDEW GVDVAITGSQ
201: KALSLPTGIG IVVAGPRAIE ASKHAKSLRV FFDWKDYLKF YQLGTYWPYT PSIHLLYGLR AALDLIFEEG LENVIARHSR LGKATRLAVE AWGLKNCTQK
301: EEWYSDTVTA VLVPAYIDST EIVRRAWKRY NLSLGLGLNK VAGKVFRIGH LGNLNELQLL GCLAGVEMIL KDVGYPVKLG SGVAAASAYL QDTIPMIPSR
401: I

Best Arabidopsis Sequence Match ( AT2G13360.1 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.