CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81443
CDX89604
CDX93112
CDY03088
CDY17621
CDY37208

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	CDY03088	AT2G01950.1	19000166
AT2G13360.1	CDY17621	AT2G01950.1	19000166
AT2G13360.1	CDX81443	AT2G13360.1	21798944
AT2G13360.1	CDX89604	AT2G13360.1	21798944
AT2G13360.1	CDX93112	AT2G13360.1	21798944
AT2G13360.1	CDY37208	AT2G13360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013148.1-P	Field mustard	peroxisome	100.0	100.0
CDX89604	Canola	peroxisome	99.75	99.75
CDY37208	Canola	peroxisome	98.25	98.25
CDX81443	Canola	peroxisome	98.0	98.0
AT2G13360.1	Thale cress	peroxisome	96.01	96.01
Solyc12g099930.1.1	Tomato	nucleus, plastid	88.78	88.78
PGSC0003DMT400011851	Potato	cytosol	88.78	88.78
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	86.28	86.28
KRH45948	Soybean	peroxisome	86.03	86.03
Os08t0502700-01	Rice	extracellular	85.79	85.57
KRG99049	Soybean	peroxisome	85.29	85.29
GSMUA_Achr7P20440_001	Banana	unclear	84.29	84.29
VIT_06s0009g03740.t01	Wine grape	extracellular	84.04	84.04
Zm00001d031403_P001	Maize	peroxisome	44.64	83.26
GSMUA_Achr8P24400_001	Banana	peroxisome	74.31	83.01
EES14284	Sorghum	cytosol	82.79	82.59
Zm00001d031349_P002	Maize	plastid	81.8	81.39
Zm00001d031379_P001	Maize	plastid	78.8	81.03
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	56.61	77.47
HORVU7Hr1G049870.3	Barley	plastid	78.8	72.15
Zm00001d031402_P001	Maize	cytosol	19.45	71.56
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	61.35	71.3
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	16.46	70.97

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	GO:A0A078DW30
InterPro:Aminotrans_V_PyrdxlP_BS	InterPro:Aminotrans_V_dom	EnsemblPlants:CDX93112	ProteinID:CDX93112	ProteinID:CDX93112.1	GO:GO:0003674
GO:GO:0003824	EnsemblPlantsGene:GSBRNA2T00155026001	InterPro:IPR015421	InterPro:IPR015422	PFAM:PF00266	PIRSF:PIRSF000524
ScanProsite:PS00595	PANTHER:PTHR21152	PANTHER:PTHR21152:SF29	MetaCyc:PWY-6832	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	InterPro:SP_NH2Trfase/AEP_transaminase	SUPFAM:SSF53383	UniParc:UPI0001CAA524	SEG:seg	:

Description

BnaA03g38340D

Coordinates

chrLK031874:+:1247837..1250106

Molecular Weight (calculated)

44170.5 Da

IEP (calculated)

8.449

GRAVY (calculated)

0.010

Length

401 amino acids

Sequence
(BLAST)

001: MDYMNGPGRH HLFVPGPVNI PEQVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFMFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDQNHSIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LDNVIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPNIDST EIVKRAWKRY NLSLGLGLNK VAGKVFRIGH LGHLNELQLL GCLAGVEMIL KDVGYPVVLG SGVAAASTYL QHQIPLIPSR
401: I

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.