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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • mitochondrion 2
  • peroxisome 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, peroxisome
iPSORT:mitochondrion
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:cytosol
plastid: 22065420
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d031403_P001 Maize peroxisome 53.1 99.53
Zm00001d031379_P001 Maize plastid 95.04 98.21
Zm00001d031364_P001 Maize cytosol, peroxisome, plasma membrane 68.49 94.2
EES14284 Sorghum cytosol 92.31 92.54
Os08t0502700-01 Rice extracellular 88.09 88.31
TraesCS7B01G148000.1 Wheat peroxisome, plastid 85.11 85.54
Zm00001d031402_P001 Maize cytosol 23.08 85.32
GSMUA_Achr8P24400_001 Banana peroxisome 75.19 84.4
Solyc12g099930.1.1 Tomato nucleus, plastid 83.37 83.79
PGSC0003DMT400011851 Potato cytosol 83.13 83.54
GSMUA_Achr7P20440_001 Banana unclear 82.88 83.29
Bra037207.1-P Field mustard peroxisome 81.64 82.04
CDY37208 Canola peroxisome 81.64 82.04
Bra013148.1-P Field mustard peroxisome 81.39 81.8
CDX93112 Canola peroxisome 81.39 81.8
CDX81443 Canola peroxisome 81.39 81.8
CDX89604 Canola peroxisome 81.14 81.55
KRH45948 Soybean peroxisome 80.4 80.8
KRG99049 Soybean peroxisome 80.4 80.8
VIT_06s0009g03740.t01 Wine grape extracellular 80.4 80.8
AT2G13360.1 Thale cress peroxisome 80.4 80.8
HORVU7Hr1G049870.3 Barley plastid 75.43 69.41
GSMUA_Achr10P... Banana peroxisome, plasma membrane, plastid 58.81 68.7
KRH33429 Soybean cytosol, extracellular, peroxisome, plastid 15.14 65.59
Protein Annotations
KEGG:00440+2.6.1.37MapMan:1.3.3.2EntrezGene:100281949Gene3D:3.40.640.10Gene3D:3.90.1150.10MapMan:4.1.2.1.3
InterPro:Aminotrans_V_PyrdxlP_BSInterPro:Aminotrans_V_domUniProt:B6T171EMBL:BT063936EMBL:EU958736GO:GO:0003674
GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005777
GO:GO:0008453GO:GO:0008483GO:GO:0016740GO:GO:0050281InterPro:IPR015421InterPro:IPR015422
ProteinID:ONM02762.1ProteinID:ONM02763.1PFAM:PF00266PIRSF:PIRSF000524ScanProsite:PS00595PANTHER:PTHR21152
PANTHER:PTHR21152:SF29InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_majorInterPro:SP_NH2Trfase/AEP_transaminaseSUPFAM:SSF53383
UniParc:UPI000182CA7FEnsemblPlantsGene:Zm00001d031349EnsemblPlants:Zm00001d031349_P002EnsemblPlants:Zm00001d031349_T002SEG:seg:
Description
Serine--glyoxylate aminotransferase
Coordinates
chr1:+:187059017..187060839
Molecular Weight (calculated)
44108.1 Da
IEP (calculated)
7.219
GRAVY (calculated)
0.018
Length
403 amino acids
Sequence
(BLAST)
001: MADYVYGPGR THLFVPGPVN IPDPVIRAMN RQNEDYRSPA VPALTKVLLE DVKKIFKTTT GTPFMIPTTG TGAWESALTN TLSPGDRVVS FLIGQFSLLW
101: IDQQRRLGFD VDAVESEWGQ GADLAALERR LREDAPRHAI KAVAIVHNET ATGVTNDLAA VRALLDKHAH PALLLVDGVS SICALDFRMD EWGVDVALTG
201: SQKALSMPTG MGIVCASPRA LEASKTARSV RVFFDWKDYL RFYDMGTYWP YTPSIQLLYG LRTALDLIFE EGLDNVVRRH NRLGTATRLA VEAWGLSNCC
301: QKEEWFSDTV TAAVVPPNID SAEVVRHAWK RYNLSLGLGL NKVAGKVFRI GHLGNLNELQ LLGCLSGVEM VLKDVGYPVK LGSGVAAAAA YLSNSTPLIP
401: SRI
Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)
001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I
Arabidopsis Description
AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.