Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- peroxisome 2
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d031403_P001 | Maize | peroxisome | 53.1 | 99.53 |
Zm00001d031379_P001 | Maize | plastid | 95.04 | 98.21 |
Zm00001d031364_P001 | Maize | cytosol, peroxisome, plasma membrane | 68.49 | 94.2 |
EES14284 | Sorghum | cytosol | 92.31 | 92.54 |
Os08t0502700-01 | Rice | extracellular | 88.09 | 88.31 |
TraesCS7B01G148000.1 | Wheat | peroxisome, plastid | 85.11 | 85.54 |
Zm00001d031402_P001 | Maize | cytosol | 23.08 | 85.32 |
GSMUA_Achr8P24400_001 | Banana | peroxisome | 75.19 | 84.4 |
Solyc12g099930.1.1 | Tomato | nucleus, plastid | 83.37 | 83.79 |
PGSC0003DMT400011851 | Potato | cytosol | 83.13 | 83.54 |
GSMUA_Achr7P20440_001 | Banana | unclear | 82.88 | 83.29 |
Bra037207.1-P | Field mustard | peroxisome | 81.64 | 82.04 |
CDY37208 | Canola | peroxisome | 81.64 | 82.04 |
Bra013148.1-P | Field mustard | peroxisome | 81.39 | 81.8 |
CDX93112 | Canola | peroxisome | 81.39 | 81.8 |
CDX81443 | Canola | peroxisome | 81.39 | 81.8 |
CDX89604 | Canola | peroxisome | 81.14 | 81.55 |
KRH45948 | Soybean | peroxisome | 80.4 | 80.8 |
KRG99049 | Soybean | peroxisome | 80.4 | 80.8 |
VIT_06s0009g03740.t01 | Wine grape | extracellular | 80.4 | 80.8 |
AT2G13360.1 | Thale cress | peroxisome | 80.4 | 80.8 |
HORVU7Hr1G049870.3 | Barley | plastid | 75.43 | 69.41 |
GSMUA_Achr10P... | Banana | peroxisome, plasma membrane, plastid | 58.81 | 68.7 |
KRH33429 | Soybean | cytosol, extracellular, peroxisome, plastid | 15.14 | 65.59 |
Protein Annotations
KEGG:00440+2.6.1.37 | MapMan:1.3.3.2 | EntrezGene:100281949 | Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | MapMan:4.1.2.1.3 |
InterPro:Aminotrans_V_PyrdxlP_BS | InterPro:Aminotrans_V_dom | UniProt:B6T171 | EMBL:BT063936 | EMBL:EU958736 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 |
GO:GO:0008453 | GO:GO:0008483 | GO:GO:0016740 | GO:GO:0050281 | InterPro:IPR015421 | InterPro:IPR015422 |
ProteinID:ONM02762.1 | ProteinID:ONM02763.1 | PFAM:PF00266 | PIRSF:PIRSF000524 | ScanProsite:PS00595 | PANTHER:PTHR21152 |
PANTHER:PTHR21152:SF29 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 | InterPro:PyrdxlP-dep_Trfase_major | InterPro:SP_NH2Trfase/AEP_transaminase | SUPFAM:SSF53383 |
UniParc:UPI000182CA7F | EnsemblPlantsGene:Zm00001d031349 | EnsemblPlants:Zm00001d031349_P002 | EnsemblPlants:Zm00001d031349_T002 | SEG:seg | : |
Description
Serine--glyoxylate aminotransferase
Coordinates
chr1:+:187059017..187060839
Molecular Weight (calculated)
44108.1 Da
IEP (calculated)
7.219
GRAVY (calculated)
0.018
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MADYVYGPGR THLFVPGPVN IPDPVIRAMN RQNEDYRSPA VPALTKVLLE DVKKIFKTTT GTPFMIPTTG TGAWESALTN TLSPGDRVVS FLIGQFSLLW
101: IDQQRRLGFD VDAVESEWGQ GADLAALERR LREDAPRHAI KAVAIVHNET ATGVTNDLAA VRALLDKHAH PALLLVDGVS SICALDFRMD EWGVDVALTG
201: SQKALSMPTG MGIVCASPRA LEASKTARSV RVFFDWKDYL RFYDMGTYWP YTPSIQLLYG LRTALDLIFE EGLDNVVRRH NRLGTATRLA VEAWGLSNCC
301: QKEEWFSDTV TAAVVPPNID SAEVVRHAWK RYNLSLGLGL NKVAGKVFRI GHLGNLNELQ LLGCLSGVEM VLKDVGYPVK LGSGVAAAAA YLSNSTPLIP
401: SRI
101: IDQQRRLGFD VDAVESEWGQ GADLAALERR LREDAPRHAI KAVAIVHNET ATGVTNDLAA VRALLDKHAH PALLLVDGVS SICALDFRMD EWGVDVALTG
201: SQKALSMPTG MGIVCASPRA LEASKTARSV RVFFDWKDYL RFYDMGTYWP YTPSIQLLYG LRTALDLIFE EGLDNVVRRH NRLGTATRLA VEAWGLSNCC
301: QKEEWFSDTV TAAVVPPNID SAEVVRHAWK RYNLSLGLGL NKVAGKVFRI GHLGNLNELQ LLGCLSGVEM VLKDVGYPVK LGSGVAAAAA YLSNSTPLIP
401: SRI
001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I
Arabidopsis Description
AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.