Factsheet for Os08t0502700-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0502700-01
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	Os10t0114400-01	AT2G01950.1	19000166
AT2G13360.1	Os08t0502700-01	AT2G13360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031403_P001	Maize	peroxisome	49.01	91.63
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	91.29	91.52
EES14284	Sorghum	cytosol	89.8	89.8
Zm00001d031349_P002	Maize	plastid	88.31	88.09
Solyc12g099930.1.1	Tomato	nucleus, plastid	87.06	87.28
PGSC0003DMT400011851	Potato	cytosol	87.06	87.28
Zm00001d031379_P001	Maize	plastid	84.33	86.92
GSMUA_Achr8P24400_001	Banana	peroxisome	76.87	86.07
CDX89604	Canola	peroxisome	85.82	86.03
Bra013148.1-P	Field mustard	peroxisome	85.57	85.79
CDX93112	Canola	peroxisome	85.57	85.79
CDY37208	Canola	peroxisome	85.07	85.29
Bra037207.1-P	Field mustard	peroxisome	85.07	85.29
GSMUA_Achr7P20440_001	Banana	unclear	84.83	85.04
CDX81443	Canola	peroxisome	84.83	85.04
KRH45948	Soybean	peroxisome	84.08	84.29
AT2G13360.1	Thale cress	peroxisome	84.08	84.29
KRG99049	Soybean	peroxisome	83.08	83.29
VIT_06s0009g03740.t01	Wine grape	extracellular	82.34	82.54
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	59.95	82.25
Zm00001d031402_P001	Maize	cytosol	20.9	77.06
HORVU7Hr1G049870.3	Barley	plastid	81.84	75.11
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	16.67	72.04
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	61.19	71.3

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	EntrezGene:4345962
EMBL:AK064774	EMBL:AK065126	InterPro:Aminotrans_V_PyrdxlP_BS	InterPro:Aminotrans_V_dom	ProteinID:BAD08917.1	ProteinID:BAD09269.1
ProteinID:BAF24084.1	ProteinID:BAT06130.1	ProteinID:EAZ43252.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004760
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150
GO:GO:0008152	GO:GO:0008453	GO:GO:0008483	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019265	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlantsGene:Os08g0502700	EnsemblPlants:Os08t0502700-01	PFAM:PF00266
PIRSF:PIRSF000524	ScanProsite:PS00595	PANTHER:PTHR21152	PANTHER:PTHR21152:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	UniProt:Q6ZFI6	InterPro:SP_NH2Trfase/AEP_transaminase	SUPFAM:SSF53383	UniParc:UPI000023AC64	RefSeq:XP_015650532.1
SEG:seg	:	:	:	:	:

Description

Pyridoxal phosphate-dependent transferase, major region, subdomain 1 domain containing protein. (Os08t0502700-01);Similar to serine--glyoxylate aminotransferase. (Os08t0502700-03)

Coordinates

chr8:-:24828211..24830863

Molecular Weight (calculated)

44268.4 Da

IEP (calculated)

8.291

GRAVY (calculated)

-0.006

Length

402 amino acids

Sequence
(BLAST)

001: MADYVYGPGR NHLFVPGPVN IPDQVIRAMS RQNEDYRSPA VPALTKTLLE DVKQIFKTTT GTPFLFPTTG TGAWESALTN TLSPGDKIVS FLIGQFSLLW
101: IDQQQRLNFN VDVVESDWGY GADLAALDYK LRQDPSHSIK AICIVHNETA TGVTNDLSAV RKILDKHRHP ALLLVDGVSS ICALDFRMDE WGVDVALTGS
201: QKALSLPTGL GIVCASPKAL EASKTAKSVR VFFDWKDYLK FYKMGTYWPY TPSIQLLYGL RTALDLIFEE GLENVIKRHN RLGTATRLAV EAWGLKNCTQ
301: KEEWFSDTVT AVVVPPYIDS AEIVKHAWKR YNLSLGLGLN KVAGKVFRIG HLGHLNELQL MGALSGVEMV LKDIGYPVKL GSGVAAAAAY LSNSTPLIPS
401: RI

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.