Factsheet for GSMUA_Achr10P31560_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

plastid 2
peroxisome 4
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P15100_001
GSMUA_Achr7P20440_001
GSMUA_Achr8P24400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166
AT2G13360.1	GSMUA_Achr10P...	AT2G13360.1	21798944
AT2G13360.1	GSMUA_Achr7P20440_001	AT2G13360.1	21798944
AT2G13360.1	GSMUA_Achr8P24400_001	AT2G13360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P24400_001	Banana	peroxisome	76.81	73.82
Zm00001d031403_P001	Maize	peroxisome	45.22	72.56
GSMUA_Achr7P20440_001	Banana	unclear	77.97	67.08
VIT_06s0009g03740.t01	Wine grape	extracellular	72.75	62.59
Solyc12g099930.1.1	Tomato	nucleus, plastid	72.46	62.34
PGSC0003DMT400011851	Potato	cytosol	72.46	62.34
Bra013148.1-P	Field mustard	peroxisome	71.3	61.35
KRH45948	Soybean	peroxisome	71.3	61.35
CDX93112	Canola	peroxisome	71.3	61.35
Os08t0502700-01	Rice	extracellular	71.3	61.19
CDX89604	Canola	peroxisome	71.01	61.1
CDY37208	Canola	peroxisome	70.72	60.85
KRG99049	Soybean	peroxisome	70.72	60.85
CDX81443	Canola	peroxisome	70.72	60.85
Bra037207.1-P	Field mustard	peroxisome	70.43	60.6
EES14284	Sorghum	cytosol	70.43	60.45
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	70.14	60.35
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	16.23	60.22
AT2G13360.1	Thale cress	peroxisome	69.57	59.85
Zm00001d031349_P002	Maize	plastid	68.7	58.81
Zm00001d031379_P001	Maize	plastid	65.51	57.95
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	46.09	54.27
HORVU7Hr1G049870.3	Barley	plastid	62.32	49.09
Zm00001d031402_P001	Maize	cytosol	5.51	17.43

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	InterPro:Aminotrans_V_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr10G31560_001
EnsemblPlants:GSMUA_Achr10P31560_001	EnsemblPlants:GSMUA_Achr10T31560_001	InterPro:IPR015421	InterPro:IPR015422	UniProt:M0RN30	PFAM:PF00266
PIRSF:PIRSF000524	PANTHER:PTHR21152	PANTHER:PTHR21152:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
InterPro:SP_NH2Trfase/AEP_transaminase	SUPFAM:SSF53383	TMHMM:TMhelix	UniParc:UPI000294C119	SEG:seg	:

Description

Serine--glyoxylate aminotransferase [Source:GMGC_GENE;Acc:GSMUA_Achr10G31560_001]

Coordinates

chr10:-:33628807..33632218

Molecular Weight (calculated)

38165.5 Da

IEP (calculated)

9.778

GRAVY (calculated)

0.067

Length

345 amino acids

Sequence
(BLAST)

001: MEDTGPNRSA RNGGLGLTNT LSSGDRIVSF LIGQFSLVWI DQQQSLNFNL NVIESEWGRG ANLDVLASKL AADPSHSIKA VCIVHNETAT GVTNNLAAVR
101: KLLDEYGHPA LVPVNGVSSI CSLDLRMDEW GIDVALTGSQ KAPSMPTRMG IVCASPKAME AAKSAKSVRV FFDWNDYLKL YKMGTYWPYT PSIQLLHGLR
201: TALDLFFEEG FDNVTARHSR LGKATRLAVE AWGLKNCTQE EWWFHLVLTA LLWWFHLVLT ALIIVKRAWT RYNLIMGLGL KKVAGKVFRI GHLGKLNDVL
301: SLRNKKHFGV EMVLRDVGYP VKLGSGVAAA AAYLQNTIPM IPSRI

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.