CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES14284
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	OQU92006	AT2G01950.1	19000166
AT2G13360.1	EES14284	AT2G13360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031403_P001	Maize	peroxisome	50.75	94.88
Zm00001d031349_P002	Maize	plastid	92.54	92.31
Zm00001d031379_P001	Maize	plastid	88.56	91.28
Os08t0502700-01	Rice	extracellular	89.8	89.8
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	88.81	89.03
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	63.68	87.37
GSMUA_Achr8P24400_001	Banana	peroxisome	77.11	86.35
Solyc12g099930.1.1	Tomato	nucleus, plastid	84.58	84.79
PGSC0003DMT400011851	Potato	cytosol	84.33	84.54
GSMUA_Achr7P20440_001	Banana	unclear	83.83	84.04
KRH45948	Soybean	peroxisome	83.33	83.54
Bra013148.1-P	Field mustard	peroxisome	82.59	82.79
CDY37208	Canola	peroxisome	82.59	82.79
CDX93112	Canola	peroxisome	82.59	82.79
Bra037207.1-P	Field mustard	peroxisome	82.59	82.79
KRG99049	Soybean	peroxisome	82.34	82.54
VIT_06s0009g03740.t01	Wine grape	extracellular	82.34	82.54
CDX89604	Canola	peroxisome	82.34	82.54
CDX81443	Canola	peroxisome	82.34	82.54
AT2G13360.1	Thale cress	peroxisome	82.09	82.29
Zm00001d031402_P001	Maize	cytosol	22.14	81.65
HORVU7Hr1G049870.3	Barley	plastid	79.1	72.6
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	60.45	70.43
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	15.17	65.59

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	EntrezGene:8055196
InterPro:Aminotrans_V_PyrdxlP_BS	InterPro:Aminotrans_V_dom	UniProt:C5YJ49	EnsemblPlants:EES14284	ProteinID:EES14284	ProteinID:EES14284.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004760	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152
GO:GO:0008453	GO:GO:0009058	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016020
GO:GO:0016740	GO:GO:0019265	GO:GO:0048046	GO:GO:0050281	InterPro:IPR015421	InterPro:IPR015422
PFAM:PF00266	PIRSF:PIRSF000524	ScanProsite:PS00595	PANTHER:PTHR21152	PANTHER:PTHR21152:SF29	MetaCyc:PWY-6832
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	EnsemblPlantsGene:SORBI_3007G213700	InterPro:SP_NH2Trfase/AEP_transaminase	SUPFAM:SSF53383
unigene:Sbi.6902	UniParc:UPI0001A87EBE	RefSeq:XP_002444789.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:64253699..64257410

Molecular Weight (calculated)

44048.1 Da

IEP (calculated)

6.512

GRAVY (calculated)

0.061

Length

402 amino acids

Sequence
(BLAST)

001: MADYVYGPGR NHLFVPGPVN IPDPVIRAMN RQNEDYRSPA IPALTKVLLE DVKRIFKTTT GTPFLIPTTG TGAWESALTN TLSPGDRIVS FLIGQFSLLW
101: IDQQQRLGFD VDVVESDWGH GADLDALERK LRDDTLHTIK AVAIVHNETA TGVTNDLAAV RTLLDAYAHP ALLLVDGVSS ICALDFRMDE WGVDVALTGS
201: QKALSMPTGM GIVCASSKAL EASKAARSVR VFFDWKDYLR FYEMGTYWPY TPSIQLLYGL RTALDLIFEE GLDNVVKRHN RLGTATRFAV EAWGLKNCCQ
301: KEECFSDTVT AVVVPPYIDS AEIVKHAWKR YNLSLGLGLN KVAGKVFRIG HLGNLNELQL LGCLSGVEMV LKDVGYPVKL GSGVAAAAAY LSNSTPLIPS
401: RI

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.