Factsheet for PGSC0003DMT400011851

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011851
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400075691
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT2G13360.1	PGSC0003DMT400011851	AT2G13360.1	21798944
AT2G13360.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT2G13360.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT2G13360.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT2G13360.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT2G13360.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT2G13360.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT2G13360.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099930.1.1	Tomato	nucleus, plastid	99.75	99.75
CDX81443	Canola	peroxisome	89.03	89.03
CDY37208	Canola	peroxisome	89.03	89.03
Bra013148.1-P	Field mustard	peroxisome	88.78	88.78
Bra037207.1-P	Field mustard	peroxisome	88.78	88.78
CDX93112	Canola	peroxisome	88.78	88.78
CDX89604	Canola	peroxisome	88.53	88.53
AT2G13360.1	Thale cress	peroxisome	87.78	87.78
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	87.78	87.78
Os08t0502700-01	Rice	extracellular	87.28	87.06
VIT_06s0009g03740.t01	Wine grape	extracellular	87.03	87.03
GSMUA_Achr7P20440_001	Banana	unclear	86.78	86.78
Zm00001d031403_P001	Maize	peroxisome	46.38	86.51
GSMUA_Achr8P24400_001	Banana	peroxisome	77.06	86.07
KRH45948	Soybean	peroxisome	86.03	86.03
KRG99049	Soybean	peroxisome	85.04	85.04
EES14284	Sorghum	cytosol	84.54	84.33
Zm00001d031349_P002	Maize	plastid	83.54	83.13
Zm00001d031379_P001	Maize	plastid	79.8	82.05
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	57.86	79.18
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	16.96	73.12
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	62.34	72.46
HORVU7Hr1G049870.3	Barley	plastid	79.05	72.37
Zm00001d031402_P001	Maize	cytosol	19.45	71.56

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	EntrezGene:102592345	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3
InterPro:Aminotrans_V_PyrdxlP_BS	InterPro:Aminotrans_V_dom	GO:GO:0003674	GO:GO:0003824	InterPro:IPR015421	InterPro:IPR015422
UniProt:M1A0A3	PFAM:PF00266	EnsemblPlantsGene:PGSC0003DMG400004652	PGSC:PGSC0003DMG400004652	EnsemblPlants:PGSC0003DMT400011851	PIRSF:PIRSF000524
ScanProsite:PS00595	PANTHER:PTHR21152	PANTHER:PTHR21152:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
InterPro:SP_NH2Trfase/AEP_transaminase	SUPFAM:SSF53383	UniParc:UPI0002953C72	RefSeq:XP_006349776.1	SEG:seg	:

Description

Serine-pyruvate aminotransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400004652]

Coordinates

chr12:+:60493625..60497138

Molecular Weight (calculated)

43979.0 Da

IEP (calculated)

8.205

GRAVY (calculated)

0.014

Length

401 amino acids

Sequence
(BLAST)

001: MDYVNGPGRN HLFVPGPVNI PEQVLRAMNR NNEDYRSPAV PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRTVSF LIGQFSLLWI
101: DQQKRLNFDV DVVESDWGQG ANLEVLASKI AEDKSHTIKA VCIVHNETAT GVTNNLATVR KILDHYQHPA LFLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ASKTAKSVRV FFDWSDYLKF YKLGTYWPYT PSIQLLYGLR AALDLLFEEG LDNVIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWFSDTVTA VVVPPHIESS EIVKRAWKRY NLSLGLGLNK VAGKVFRIGH LGSLNELQLL GCLAGVEMVL KDIGYPVKFG SGVAAASAFL QNSTPLIPSR
401: I

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.