Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031364_P001 | Maize | cytosol, peroxisome, plasma membrane | 66.97 | 24.91 |
| Zm00001d031349_P002 | Maize | plastid | 85.32 | 23.08 |
| Zm00001d031379_P001 | Maize | plastid | 82.57 | 23.08 |
| EES14284 | Sorghum | cytosol | 81.65 | 22.14 |
| Os08t0502700-01 | Rice | extracellular | 77.06 | 20.9 |
| GSMUA_Achr7P20440_001 | Banana | unclear | 73.39 | 19.95 |
| TraesCS7B01G148000.1 | Wheat | peroxisome, plastid | 73.39 | 19.95 |
| AT2G13360.1 | Thale cress | peroxisome | 72.48 | 19.7 |
| CDY37208 | Canola | peroxisome | 71.56 | 19.45 |
| CDX93112 | Canola | peroxisome | 71.56 | 19.45 |
| CDX89604 | Canola | peroxisome | 71.56 | 19.45 |
| Bra037207.1-P | Field mustard | peroxisome | 71.56 | 19.45 |
| PGSC0003DMT400011851 | Potato | cytosol | 71.56 | 19.45 |
| Solyc12g099930.1.1 | Tomato | nucleus, plastid | 71.56 | 19.45 |
| Bra013148.1-P | Field mustard | peroxisome | 71.56 | 19.45 |
| CDX81443 | Canola | peroxisome | 70.64 | 19.2 |
| VIT_06s0009g03740.t01 | Wine grape | extracellular | 67.89 | 18.45 |
| KRH45948 | Soybean | peroxisome | 67.89 | 18.45 |
| KRG99049 | Soybean | peroxisome | 66.06 | 17.96 |
| HORVU7Hr1G049870.3 | Barley | plastid | 71.56 | 17.81 |
| GSMUA_Achr8P24400_001 | Banana | peroxisome | 37.61 | 11.42 |
| Zm00001d031403_P001 | Maize | peroxisome | 11.93 | 6.05 |
| GSMUA_Achr10P... | Banana | peroxisome, plasma membrane, plastid | 17.43 | 5.51 |
| KRH33429 | Soybean | cytosol, extracellular, peroxisome, plastid | 0.92 | 1.08 |
Protein Annotations
| EnsemblPlants:Zm00001d031402_P001 | EnsemblPlants:Zm00001d031402_T001 | EnsemblPlantsGene:Zm00001d031402 | Gene3D:3.40.640.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008483 | GO:GO:0016740 | InterPro:IPR015421 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_major | PANTHER:PTHR21152 |
| PANTHER:PTHR21152:SF29 | ProteinID:ONM02801.1 | SEG:seg | SUPFAM:SSF53383 | UniParc:UPI0008428420 | UniProt:A0A1D6KII7 |
| MapMan:35.1 | : | : | : | : | : |
Description
Serine--glyoxylate aminotransferase
Coordinates
chr1:+:189190929..189194675
Molecular Weight (calculated)
11402.6 Da
IEP (calculated)
7.180
GRAVY (calculated)
-0.118
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MADYVYGPGR THLFMPGPVN IPDPVIRAMN GQNEDYRSPA VPALTKVLLE DVKKIFKTTT GTPFMIPTTG MGAWESALTN TLSRATGSCP SSSGSSACCE
101: STSSGLLSG
101: STSSGLLSG
001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I
Arabidopsis Description
AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.