Factsheet for GSMUA_Achr7P20440_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 3
peroxisome 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P15100_001
GSMUA_Achr7P20440_001
GSMUA_Achr8P24400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166
AT2G13360.1	GSMUA_Achr10P...	AT2G13360.1	21798944
AT2G13360.1	GSMUA_Achr7P20440_001	AT2G13360.1	21798944
AT2G13360.1	GSMUA_Achr8P24400_001	AT2G13360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P24400_001	Banana	peroxisome	81.3	90.81
Solyc12g099930.1.1	Tomato	nucleus, plastid	87.03	87.03
PGSC0003DMT400011851	Potato	cytosol	86.78	86.78
Zm00001d031403_P001	Maize	peroxisome	45.64	85.12
VIT_06s0009g03740.t01	Wine grape	extracellular	85.04	85.04
Os08t0502700-01	Rice	extracellular	85.04	84.83
Bra013148.1-P	Field mustard	peroxisome	84.29	84.29
CDX93112	Canola	peroxisome	84.29	84.29
CDX89604	Canola	peroxisome	84.04	84.04
AT2G13360.1	Thale cress	peroxisome	84.04	84.04
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	84.04	84.04
KRH45948	Soybean	peroxisome	84.04	84.04
EES14284	Sorghum	cytosol	84.04	83.83
CDY37208	Canola	peroxisome	83.79	83.79
CDX81443	Canola	peroxisome	83.54	83.54
Bra037207.1-P	Field mustard	peroxisome	83.54	83.54
KRG99049	Soybean	peroxisome	83.29	83.29
Zm00001d031349_P002	Maize	plastid	83.29	82.88
Zm00001d031379_P001	Maize	plastid	79.8	82.05
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	58.6	80.2
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	67.08	77.97
Zm00001d031402_P001	Maize	cytosol	19.95	73.39
HORVU7Hr1G049870.3	Barley	plastid	76.06	69.63
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	15.96	68.82

Protein Annotations

KEGG:00440+2.6.1.37	MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	InterPro:Aminotrans_V_PyrdxlP_BS
InterPro:Aminotrans_V_dom	GO:GO:0003674	GO:GO:0003824	EnsemblPlantsGene:GSMUA_Achr7G20440_001	EnsemblPlants:GSMUA_Achr7P20440_001	EnsemblPlants:GSMUA_Achr7T20440_001
InterPro:IPR015421	InterPro:IPR015422	UniProt:M0TJ81	PFAM:PF00266	PIRSF:PIRSF000524	ScanProsite:PS00595
PANTHER:PTHR21152	PANTHER:PTHR21152:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	InterPro:SP_NH2Trfase/AEP_transaminase
SUPFAM:SSF53383	UniParc:UPI000296AC23	SEG:seg	:	:	:

Description

Serine--glyoxylate aminotransferase [Source:GMGC_GENE;Acc:GSMUA_Achr7G20440_001]

Coordinates

chr7:-:23572820..23577117

Molecular Weight (calculated)

44048.1 Da

IEP (calculated)

7.917

GRAVY (calculated)

0.033

Length

401 amino acids

Sequence
(BLAST)

001: MDFFYAPGRN HLFVPGPVNI PEPVIRAMNR NNEDYRSPAV PALTKTLLED VKKIFKTTSG TPFLIPTTGT GAWESALTNT LSPGDKIVSF LIGQFSLLWI
101: DQQQRLNFNV DVIESEWGRG ADLDALASKL AADWSHSIKA VCIVHNETAT GVTNNLATVR KLLDEHNHPA LLLVDGVSSI CAIDFRMDEW GVDVALTGSQ
201: KALSMPTGMG IVCASPKALE AAKSAKSVRV FFDWNDYLKF YKMGTYWPYT PSIQLLYGFR AALDLLFEEG LDNVIARHSR LGKATRLAVE AWGLKNCTQK
301: EEWFSDTVTA VMVPPHINSS DVVKRAWTRY NLSLGLGLNK VAGKVFRIGH LGNLNDLQLL GCLSGVEMVL RDVGYQVKLG SGVAAAAAYL QNTIPMISSR
401: I

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.