Factsheet for Zm00001d031364_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
peroxisome 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	mitochondrion, peroxisome, plasma membrane, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001
Zm00001d031349_P002
Zm00001d031364_P001
Zm00001d031379_P001
Zm00001d031402_P001
Zm00001d031403_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT2G13360.1	Zm00001d031349_P002	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031364_P001	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031379_P001	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031402_P001	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031403_P001	AT2G13360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031349_P002	Maize	plastid	94.2	68.49
Zm00001d031379_P001	Maize	plastid	89.42	67.18
Zm00001d031402_P001	Maize	cytosol	24.91	66.97
EES14284	Sorghum	cytosol	87.37	63.68
Os08t0502700-01	Rice	extracellular	82.25	59.95
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	81.91	59.85
GSMUA_Achr7P20440_001	Banana	unclear	80.2	58.6
Solyc12g099930.1.1	Tomato	nucleus, plastid	79.18	57.86
PGSC0003DMT400011851	Potato	cytosol	79.18	57.86
Bra013148.1-P	Field mustard	peroxisome	77.47	56.61
CDX89604	Canola	peroxisome	77.47	56.61
CDX93112	Canola	peroxisome	77.47	56.61
VIT_06s0009g03740.t01	Wine grape	extracellular	77.13	56.36
CDY37208	Canola	peroxisome	77.13	56.36
CDX81443	Canola	peroxisome	77.13	56.36
Bra037207.1-P	Field mustard	peroxisome	77.13	56.36
GSMUA_Achr8P24400_001	Banana	peroxisome	68.6	55.99
AT2G13360.1	Thale cress	peroxisome	76.45	55.86
KRH45948	Soybean	peroxisome	76.45	55.86
KRG99049	Soybean	peroxisome	76.11	55.61
Zm00001d031403_P001	Maize	peroxisome	35.84	48.84
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	54.27	46.09
HORVU7Hr1G049870.3	Barley	plastid	68.6	45.89
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	8.19	25.81

Protein Annotations

MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	UniProt:A0A1D6KIG3	InterPro:Aminotrans_V_PyrdxlP_BS
InterPro:Aminotrans_V_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0008483	GO:GO:0016740	InterPro:IPR015421
InterPro:IPR015422	ProteinID:ONM02777.1	PFAM:PF00266	ScanProsite:PS00595	PANTHER:PTHR21152	PANTHER:PTHR21152:SF29
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI000842BA20	EnsemblPlantsGene:Zm00001d031364
EnsemblPlants:Zm00001d031364_P001	EnsemblPlants:Zm00001d031364_T001	SEG:seg	:	:	:

Description

Serine--glyoxylate aminotransferase

Coordinates

chr1:+:187454423..187455372

Molecular Weight (calculated)

31710.6 Da

IEP (calculated)

6.923

GRAVY (calculated)

0.220

Length

293 amino acids

Sequence
(BLAST)

001: MFVPGPVNIP GPVNRAMNRQ NEDYRSPAVP ALTKVLLEDV KKIFKTTTGT PFMIPTTGTG VWESALTNTL SPGDRVVSFL IGQFSLLWID QQRRLGFDVD
101: AVESEWGQGA DLAALERRLR DDAPRHAIKA VAIVHNETAT GVTNDLAAVR ALLDKHAHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ KALSMPTGMG
201: IVCASPRALE ASKTARSVRV FFDWKDYLSA TYYILMLPNI FLLLLLCQLQ LLGCLSGVEM VLKDVGYPVK LGSGVAAAAA YLSNSTPLIP SRI

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.