Factsheet for Zm00001d031403_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001
Zm00001d031349_P002
Zm00001d031364_P001
Zm00001d031379_P001
Zm00001d031402_P001
Zm00001d031403_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13360.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT2G13360.1	Zm00001d031349_P002	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031364_P001	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031379_P001	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031402_P001	AT2G13360.1	21798944
AT2G13360.1	Zm00001d031403_P001	AT2G13360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33429	Soybean	cytosol, extracellular, peroxisome, plastid	27.91	64.52
Zm00001d031349_P002	Maize	plastid	99.53	53.1
GSMUA_Achr8P24400_001	Banana	peroxisome	87.44	52.37
Zm00001d031379_P001	Maize	plastid	93.49	51.54
EES14284	Sorghum	cytosol	94.88	50.75
Os08t0502700-01	Rice	extracellular	91.63	49.01
TraesCS7B01G148000.1	Wheat	peroxisome, plastid	88.84	47.63
Solyc12g099930.1.1	Tomato	nucleus, plastid	86.98	46.63
PGSC0003DMT400011851	Potato	cytosol	86.51	46.38
GSMUA_Achr7P20440_001	Banana	unclear	85.12	45.64
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	72.56	45.22
CDY37208	Canola	peroxisome	83.72	44.89
CDX81443	Canola	peroxisome	83.72	44.89
Bra037207.1-P	Field mustard	peroxisome	83.72	44.89
VIT_06s0009g03740.t01	Wine grape	extracellular	83.26	44.64
CDX93112	Canola	peroxisome	83.26	44.64
Bra013148.1-P	Field mustard	peroxisome	83.26	44.64
KRG99049	Soybean	peroxisome	82.79	44.39
CDX89604	Canola	peroxisome	82.79	44.39
KRH45948	Soybean	peroxisome	82.33	44.14
AT2G13360.1	Thale cress	peroxisome	80.93	43.39
Zm00001d031364_P001	Maize	cytosol, peroxisome, plasma membrane	48.84	35.84
HORVU7Hr1G049870.3	Barley	plastid	70.7	34.7
Zm00001d031402_P001	Maize	cytosol	6.05	11.93

Protein Annotations

MapMan:1.3.3.2	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.2.1.3	UniProt:A0A1D6KII8	InterPro:Aminotrans_V_PyrdxlP_BS
InterPro:Aminotrans_V_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0008453	GO:GO:0008483	GO:GO:0016740	GO:GO:0050281
InterPro:IPR015421	InterPro:IPR015422	ProteinID:ONM02802.1	PFAM:PF00266	ScanProsite:PS00595	PANTHER:PTHR21152
PANTHER:PTHR21152:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI000842E202
EnsemblPlantsGene:Zm00001d031403	EnsemblPlants:Zm00001d031403_P001	EnsemblPlants:Zm00001d031403_T001	:	:	:

Description

Serine--glyoxylate aminotransferase

Coordinates

chr1:+:189201780..189202544

Molecular Weight (calculated)

23626.6 Da

IEP (calculated)

8.304

GRAVY (calculated)

0.077

Length

215 amino acids

Sequence
(BLAST)

001: MDEWGVDVAL TGSQKALSMP TGMGIVCASP RALEASKTAR SVRVFFDWKD YLRFYDMGTY WPYTPSIQLL YGLRTALDLI FEEGLDNVVR RHNRLGTATR
101: LAVEAWGLSN CCQKEEWFSD TVTAVVVPPN IDSAEVVRHA WKRYNLSLGL GLNKVAGKVF RIGHLGNLNE LQLLGCLSGV EMVLKDVGYP VKLGSGVAAA
201: AAYLSNSTPL IPSRI

Best Arabidopsis Sequence Match ( AT2G13360.2 )
(BLAST)

001: MDYMYGPGRH HLFVPGPVNI PEPVIRAMNR NNEDYRSPAI PALTKTLLED VKKIFKTTSG TPFLFPTTGT GAWESALTNT LSPGDRIVSF LIGQFSLLWI
101: DQQKRLNFNV DVVESDWGQG ANLQVLASKL SQDENHTIKA ICIVHNETAT GVTNDISAVR TLLDHYKHPA LLLVDGVSSI CALDFRMDEW GVDVALTGSQ
201: KALSLPTGLG IVCASPKALE ATKTSKSLKV FFDWNDYLKF YKLGTYWPYT PSIQLLYGLR AALDLIFEEG LENIIARHAR LGKATRLAVE AWGLKNCTQK
301: EEWISNTVTA VMVPPHIDGS EIVRRAWQRY NLSLGLGLNK VAGKVFRIGH LGNVNELQLL GCLAGVEMIL KDVGYPVVMG SGVAAASTYL QHHIPLIPSR
401: I

Arabidopsis Description

AGT1Serine--glyoxylate aminotransferase [Source:UniProtKB/Swiss-Prot;Acc:Q56YA5]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.