Factsheet for TraesCS2D01G251800.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plastid
Any Predictor:	peroxisome
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G105000.1
TraesCS7A01G241500.5
TraesCS7B01G137000.2
TraesCS7D01G240500.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	TraesCS6A01G105000.1	AT5G56290.1	21798944
AT3G14420.1	TraesCS7A01G241500.5	AT5G56290.1	21798944
AT3G14420.1	TraesCS7B01G137000.2	AT5G56290.1	21798944
AT3G14420.1	TraesCS7D01G240500.3	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G250800.1	Wheat	peroxisome	100.0	100.0
TraesCS2B01G264100.2	Wheat	peroxisome, plastid	100.0	97.87
Os07t0152900-01	Rice	peroxisome	93.75	93.5
KXG34415	Sorghum	peroxisome	92.12	91.87
Solyc07g056540.2.1	Tomato	plastid	88.32	87.6
TraesCS5D01G432900.1	Wheat	peroxisome	87.23	86.76
AT3G14420.1	Thale cress	peroxisome	86.41	86.65
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	86.41	86.65
PGSC0003DMT400071115	Potato	cytosol	86.68	85.98
KRH43857	Soybean	peroxisome	85.87	85.18
AT3G14415.2	Thale cress	peroxisome	85.87	84.72
KRH13608	Soybean	nucleus	85.05	84.37
VIT_19s0093g00510.t01	Wine grape	peroxisome	85.05	84.37
VIT_10s0003g03830.t01	Wine grape	peroxisome	83.97	83.06
Zm00001d018810_P002	Maize	peroxisome, plastid	90.22	79.43
TraesCS2D01G467700.1	Wheat	peroxisome	78.53	78.32
GSMUA_Achr4P22900_001	Banana	peroxisome	30.43	72.73
CDY70372	Canola	cytosol, mitochondrion, plastid	22.01	69.23
CDX88442	Canola	cytosol, mitochondrion, plastid	22.01	69.23
TraesCS2D01G175900.1	Wheat	peroxisome	58.97	59.29
TraesCS5D01G274300.1	Wheat	peroxisome	57.07	57.38
CDY52449	Canola	mitochondrion	32.88	55.5
Bra035032.1-P	Field mustard	mitochondrion	32.88	55.5
CDX86782	Canola	cytosol, peroxisome, plastid	33.42	55.16

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH	InterPro:FMN_HAD
InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396
PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80
SUPFAM:SSF51395	EnsemblPlantsGene:TraesCS2D01G251800	EnsemblPlants:TraesCS2D01G251800.2	TIGR:cd02809	SEG:seg	:

Description

No Description!

Coordinates

chr2D:-:301817091..301819410

Molecular Weight (calculated)

40056.6 Da

IEP (calculated)

8.373

GRAVY (calculated)

0.040

Length

368 amino acids

Sequence
(BLAST)

001: MEITNVTEYQ AIAKQKLPKM IYDYYASGAE DEWTLQENRE AFARILFRPR ILIDVSKIDM TTTILGFKLS MPIMISPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKDRKVVEQL VRRAEKAGFK AIALTVDTPR LGRREADIKN RFVLPPNLTL KNFEGLDLGK MDQANDSGLA
201: SYVAGQIDRT LSWKDVKWLQ SITTMPILVK GVITAEDSRL AVENGAAGII VSNHGARQLD YVPATISALE EVVKGAGGQI PVFLDGGVRR GTDVFKALAL
301: GAAGVFIGRP VVFSLAVAGE AGVSNVLKML RDEFELTMAL SGCNSLADIT RNHVVTEADK FGVMPSRL

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.