CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844
KRH56371
KRH62568

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	KRH10294	AT3G46090.1	17259181
AT3G14420.1	KRH23029	AT3G46090.1	17259181
AT3G14420.1	KRH24840	AT3G46090.1	17259181
AT3G14420.1	KRH29844	AT3G46090.1	17259181
AT3G14420.1	KRH56371	AT5G56290.1	21798944
AT3G14420.1	KRH62568	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43857	Soybean	peroxisome	97.3	97.3
VIT_10s0003g03830.t01	Wine grape	peroxisome	90.57	90.32
AT3G14420.1	Thale cress	peroxisome	88.95	89.92
CDX68646	Canola	peroxisome	86.25	89.64
CDX81437	Canola	peroxisome	86.25	89.64
CDY25425	Canola	peroxisome	86.25	89.64
CDX75771	Canola	peroxisome	88.41	89.37
CDX82484	Canola	peroxisome	88.41	89.37
CDY33220	Canola	peroxisome	85.98	89.36
Bra021555.1-P	Field mustard	peroxisome	83.56	89.34
PGSC0003DMT400071115	Potato	cytosol	89.22	89.22
Bra021556.1-P	Field mustard	peroxisome	88.14	89.1
CDY39115	Canola	peroxisome	88.14	89.1
CDY39114	Canola	peroxisome	88.14	89.1
CDY33221	Canola	peroxisome	88.14	89.1
Bra001550.1-P	Field mustard	peroxisome	87.87	88.83
CDX97574	Canola	peroxisome	88.41	88.65
CDX98453	Canola	peroxisome	88.41	88.65
Bra027338.1-P	Field mustard	peroxisome	88.14	88.38
Solyc07g056540.2.1	Tomato	plastid	88.14	88.14
CDX82483	Canola	peroxisome	88.41	87.94
Bra001551.1-P	Field mustard	peroxisome	84.37	87.43
KRH42555	Soybean	endoplasmic reticulum	87.06	87.3
KRH42559	Soybean	cytosol	7.28	87.1
Os03t0786100-01	Rice	peroxisome	86.52	86.99
Os07t0152900-01	Rice	peroxisome	86.52	86.99
AT3G14415.2	Thale cress	peroxisome	87.33	86.86
KXG34415	Sorghum	peroxisome	86.25	86.72
EER93339	Sorghum	peroxisome	85.98	86.68
KRH42560	Soybean	peroxisome	84.64	85.79
TraesCS5B01G426500.1	Wheat	golgi	85.44	85.68
TraesCS5D01G432900.1	Wheat	peroxisome	85.44	85.68
TraesCS5A01G424400.1	Wheat	peroxisome	85.18	85.41
KRH58663	Soybean	peroxisome	84.64	85.33
TraesCS2A01G250800.1	Wheat	peroxisome	84.37	85.05
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	84.37	85.05
HORVU0Hr1G013900.4	Barley	peroxisome	74.93	85.02
CDY40891	Canola	peroxisome	70.89	84.57
CDX81438	Canola	peroxisome	70.89	84.57
CDY16268	Canola	peroxisome	70.89	84.57
CDY11082	Canola	peroxisome	70.89	84.57
KRH42553	Soybean	endoplasmic reticulum	83.83	84.51
TraesCS2B01G264100.2	Wheat	peroxisome, plastid	84.37	83.24
CDX98451	Canola	peroxisome	67.92	82.35
CDY40892	Canola	peroxisome	38.27	82.08
KRH58657	Soybean	peroxisome, plastid	65.77	81.88
KRH42558	Soybean	peroxisome	45.01	81.46
Bra005793.1-P	Field mustard	peroxisome	25.61	81.2
CDY25424	Canola	peroxisome	73.05	80.9
CDX97573	Canola	peroxisome	82.75	80.58
CDX68645	Canola	peroxisome	71.97	79.23
CDY35618	Canola	peroxisome	71.97	79.23
KRH42554	Soybean	peroxisome	63.34	77.56
Zm00001d018810_P002	Maize	peroxisome, plastid	86.25	76.56
GSMUA_Achr4P22900_001	Banana	peroxisome	31.54	75.97
HORVU2Hr1G060010.5	Barley	peroxisome	76.01	75.6
Os08t0198700-01	Rice	vacuole	13.75	72.86
KRH25749	Soybean	vacuole	15.09	66.67
Bra027339.1-P	Field mustard	peroxisome	81.67	64.61
CDX75772	Canola	mitochondrion	49.87	64.24
HORVU2Hr1G060070.1	Barley	peroxisome	24.53	57.96
Os04t0623600-01	Rice	extracellular	11.32	42.86

Protein Annotations

MapMan:1.3.2	EntrezGene:100170730	Gene3D:3.20.20.70	EMBL:ACUP02009764	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN
InterPro:FMN-dep_DH	InterPro:FMN_HAD	InterPro:FMN_hydac_DH_AS	EnsemblPlantsGene:GLYMA_15G250800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	UniProt:I1MJ29	InterPro:IPR013785	InterPro:IPR037396	EnsemblPlants:KRH13608	ProteinID:KRH13608
ProteinID:KRH13608.1	PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578
PANTHER:PTHR10578:SF80	SUPFAM:SSF51395	UniParc:UPI00023D6C90	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:-:47892521..47898180

Molecular Weight (calculated)

40796.5 Da

IEP (calculated)

9.436

GRAVY (calculated)

0.016

Length

371 amino acids

Sequence
(BLAST)

001: MEITNVSEYE AIAKQKLPKM AFDYYASGAE DQWTLQENRN AFSRILFRPR ILIDVSKIDL TTTVLGFKIS MPIMIAPTAF QKMAHPEGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKDRNVVAQL VRRAERAGFK AIALTVDTPI LGRREADIKN RFTLPPFLTL KNFEGLDLGK MDKADDSGLA
201: SYVSGQIDRT LSWKDVKWLQ TITKLPILVK GVLTAEDTRI AIQSGAAGII VSNHGARQLD YVPATISALE EVVKAAEGRL PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRNVLRML REEFELTMAL SGCTSLKDIT RDHIVTDWDQ PRILPRALPR L

Best Arabidopsis Sequence Match ( AT3G14420.2 )
(BLAST)

001: MEITNVTEYD AIAKQKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVSKIDM TTTVLGFKIS MPIMVAPTAM QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRNVVEQL VRRAERAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDVQWLQ TITKLPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRI PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFSLAAEGE AGVRKVLQML RDEFELTMAL SGCRSLKEIS RNHITTEWDT PRPSARL

Arabidopsis Description

GLO1Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.